Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35880 181 / 1e-51 TPX2 (targeting protein for Xklp2) protein family (.1) AT2G25480 140 / 8e-37 TPX2 (targeting protein for Xklp2) protein family (.1) AT4G32330 139 / 4e-36 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) AT3G04630 111 / 2e-27 WDL1 WVD2-like 1 (.1.2.3) AT3G23090 109 / 2e-26 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT5G28646 103 / 1e-25 WVD2 WAVE-DAMPENED 2, TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT1G54460 106 / 3e-25 TPX2 (targeting protein for Xklp2) protein family (.1) AT1G70950 88 / 2e-18 TPX2 (targeting protein for Xklp2) protein family (.1) AT3G01710 49 / 5e-06 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT3G01015 44 / 0.0003 TPX2 (targeting protein for Xklp2) protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029355 [exp] 761 / 0 AT2G35880 185 / 3e-53 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10002915 [exp] 154 / 8e-42 AT4G32330 228 / 2e-70 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Lus10021223 [exp] 123 / 7e-31 AT3G23090 230 / 4e-73 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10022213 [exp] 121 / 5e-30 AT3G23090 220 / 2e-68 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10005533 [exp] 110 / 1e-26 AT1G54460 187 / 3e-57 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10006563 [exp] 110 / 1e-26 AT1G54460 187 / 2e-57 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10042543 [exp] 108 / 4e-26 AT1G54460 176 / 1e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10022003 [exp] 104 / 8e-25 AT1G54460 172 / 3e-51 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10002012 [exp] 94 / 7e-21 AT4G32330 141 / 5e-38 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066600 [exp] 265 / 1e-82 AT2G35880 149 / 5e-40 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.006G200400 [exp] 261 / 4e-81 AT2G35880 168 / 1e-46 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.006G254400 [exp] 158 / 5e-43 AT4G32330 288 / 2e-93 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Potri.018G027500 [exp] 148 / 2e-39 AT4G32330 268 / 2e-85 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Potri.008G162800 [exp] 128 / 1e-32 AT3G23090 214 / 1e-66 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.010G076200 [exp] 123 / 7e-31 AT3G23090 185 / 5e-55 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.005G055900 [exp] 113 / 1e-27 AT1G54460 207 / 4e-64 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.013G042800 [exp] 108 / 6e-26 AT1G54460 176 / 5e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.010G113000 [exp] 89 / 2e-18 AT1G70950 147 / 5e-38 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.008G129300 [exp] 89 / 2e-18 AT1G70950 241 / 2e-72 TPX2 (targeting protein for Xklp2) protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06886 [flax] [poplar] TPX2 Targeting protein for Xklp2 (TPX2) domain
Representative CDS sequence Show only first row Show all	>Lus10016193 pacid=23142672 polypeptide=Lus10016193 locus=Lus10016193.g ID=Lus10016193.BGIv1.0 annot-version=v1.0 ATGGAGTCTGAGAATTCAGGTGAGTTGAAGCACGAAATTGTGGTGGAGGGAACTAATCGCGACACGGAACAAAATGCGGAGGAGATCGTTGCTTCGAATG ATGACGTGGCAACTGATGATGCAAATGGAACTTCAGAGCATCATTCTATTGAAGCTGAAGGTCTTAATTTGATGGGTACTAAGGATGGAGAAGATACACC ACCGGTCTCAAAACCTTTAAAGGAGCTTTGCGGTTCAAAAGCTCCGGCTACTGTAAAGAACAGCAAAGCTTCGAAGGATAAGGCTAACTTGAAAGGTTCC GGTTCGATTTCGCGCAAGGAAAGGCCACAACTTTCTCAGAGCATGTCGTTTTCCGGGAGAGGAGTTCATGCTGAAAAGATGAGGAGTGTTGATGGAACCC CTGCTGCCAAAACTGATTCCACACCTGCCCCGAGTGAAGGCAAGAGATCTCGAACAAGTCTCAACAGATCGGTAACTTCCTTATCGCGTTCCAATCAAGC AAACAAGAACCGTACTGCTGAGGTTGCAACGAAGGAAGCTACTACTAGCAATCGTGTTAAAGCTCTCACAAAGCAGAAGTCTTCTGCTGCAGCCAAGCCT AGTGGCCCTCGTAGCGTGCCTGTGAAATCAAGTCCTCCTACTGAAGCAGCAGCCAAATCCCCCCCTCCAGCTGAGGTTGCAGAGTTAGCTGATCCAATCC TGAAGCCGATAGCTACATCATCGCATAGCAAAGAGGAAGACGACACTCATTCCAATGCGTCGGGTGCGACTACTCGAAGGACTTCTGCCTCCGGGTTCTC TTCGAGGTTAGAAGAACGTGCAGAAAAGAGGAAAGAGTTCTTATCAAAGCTGGAAGAGAAGATCCAAGCAAAGGAAGTTGAAAAGAGCACCTTGCAAGCA AAATCTAAGGAGAGCCAGGAAGCTGAGATCAAGCAGCTCCGGAAGAGCTTAACATTTAAGGCTGCACCTATGCCTACATTCTATAAGGAGCCGCCTCCGA AAGTTGAACTGAAGAAGATACCAACCACTCGACCAAGGTCACCAAAGCTTGGACGAAACAAGAGTGCCATCACCACAACAAACAACTCTTCCGAATCCCG CCCCATTCTCGAACCAACCAATTCAGTCAAGGAAAGACATAAAACCAACGGTGTGAAGGACTTAGCTGCCTCGAAAACACTTGTCAAGAAACCGGTCTCG AAACTCCAGCCTCAAAGAGTTTCTACAACAGAAACAACCAGTGAGCATGCTGTGAAGAAGACTGTAAAGTCCAAACCAAAGTCTACATCTTTAGGTGGAG AGACGAAAGAACCCACGAAAACCATCACAGAGAATACACAGGAGAATCCGAGTAACGGTTCATCACCGAGCCTTCCACCCTGTGACAATGGTGCAGATGA GGGAACAGTTTCGAGCTCCGTCAACCCCGAGATTGTGCCTATTCAGGAAGAAGTGGCTGTGGTGGTTGGTGGATGA
AA sequence Show only first row Show all	>Lus10016193 pacid=23142672 polypeptide=Lus10016193 locus=Lus10016193.g ID=Lus10016193.BGIv1.0 annot-version=v1.0 MESENSGELKHEIVVEGTNRDTEQNAEEIVASNDDVATDDANGTSEHHSIEAEGLNLMGTKDGEDTPPVSKPLKELCGSKAPATVKNSKASKDKANLKGS GSISRKERPQLSQSMSFSGRGVHAEKMRSVDGTPAAKTDSTPAPSEGKRSRTSLNRSVTSLSRSNQANKNRTAEVATKEATTSNRVKALTKQKSSAAAKP SGPRSVPVKSSPPTEAAAKSPPPAEVAELADPILKPIATSSHSKEEDDTHSNASGATTRRTSASGFSSRLEERAEKRKEFLSKLEEKIQAKEVEKSTLQA KSKESQEAEIKQLRKSLTFKAAPMPTFYKEPPPKVELKKIPTTRPRSPKLGRNKSAITTTNNSSESRPILEPTNSVKERHKTNGVKDLAASKTLVKKPVS KLQPQRVSTTETTSEHAVKKTVKSKPKSTSLGGETKEPTKTITENTQENPSNGSSPSLPPCDNGADEGTVSSSVNPEIVPIQEEVAVVVGG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35880			TPX2 (targeting protein for Xk...		Lus10016193 [exp]	0	1
AT4G35320			unknown protein		Lus10001621 [exp]	7.5	0.8559
AT2G44740		CYCP4;1	cyclin p4;1 (.1)		Lus10043003 [exp]	14.3	0.8607
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10021461 [exp]	14.4	0.9085
AT2G44740		CYCP4;1	cyclin p4;1 (.1)		Lus10032505 [exp]	14.9	0.8587
AT5G53760		ATMLO11, MLO11	MILDEW RESISTANCE LOCUS O 11, ...		Lus10032669 [exp]	16.2	0.7768
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10026345 [exp]	17.7	0.8452
AT4G36750			Quinone reductase family prote...		Lus10040486 [exp]	26.4	0.8380
AT1G61100			disease resistance protein (TI...		Lus10011217 [exp]	31.7	0.7828
AT1G21000			PLATZ transcription factor fam...		Lus10035554 [exp]	34.4	0.8144
AT1G76240			Arabidopsis protein of unknown...		Lus10016005 [exp]	35.1	0.8552

Compare expression of checked genes

Lus10016193 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.