Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52370 468 / 1e-164 FLA15 FASCICLIN-like arabinogalactan protein 15 precursor (.1) AT2G35860 468 / 1e-164 FLA16 FASCICLIN-like arabinogalactan protein 16 precursor (.1) AT5G06390 419 / 4e-145 FLA17 FASCICLIN-like arabinogalactan protein 17 precursor (.1) AT3G11700 411 / 9e-142 FLA18 FASCICLIN-like arabinogalactan protein 18 precursor (.1) AT5G05650 120 / 3e-33 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029353 [exp] 484 / 2e-169 AT5G06390 600 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Lus10013604 [exp] 475 / 3e-167 AT5G06390 619 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Lus10021247 [exp] 168 / 3e-48 AT2G35860 301 / 8e-99 FASCICLIN-like arabinogalactan protein 16 precursor (.1) Lus10036111 [exp] 41 / 0.0008 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G200300 [exp] 474 / 1e-166 AT5G06390 616 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.016G066500 [exp] 465 / 4e-163 AT5G06390 620 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.010G244900 [exp] 444 / 5e-155 AT5G06390 580 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.008G012400 [exp] 402 / 4e-138 AT5G06390 577 / 0.0 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.010G198250 [exp] 302 / 1e-100 AT5G06390 404 / 1e-139 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.012G006200 [exp] 290 / 8e-95 AT5G06390 400 / 4e-137 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.019G008400 [exp] 283 / 7e-93 AT5G06390 414 / 5e-143 FASCICLIN-like arabinogalactan protein 17 precursor (.1) Potri.019G120800 [exp] 44 / 0.0001 AT5G60490 124 / 2e-34 FASCICLIN-like arabinogalactan-protein 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [flax] [poplar] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Lus10016194 pacid=23142639 polypeptide=Lus10016194 locus=Lus10016194.g ID=Lus10016194.BGIv1.0 annot-version=v1.0 ATGGATCCACCCATCTATGGTGTCTCCATTTTCCTCCAACTCATCCTCCTCGTCTCCCCCCTCTCCGCCGCCGCATTACCCACCTCCACCTCCCCTCCCC CCCCCCCCCCCGCCGCCGTCCAACAAATCAATTCCAACTCCGTCCTAGTGGCCCTCCTCGACTCCCACTACACAGAGCTCTCCGAACTCATCGAGAAGGC CCTCTTACTCCCCCAATTAGAATCCGCCGTCTCCTCCCACAACCTCACCATCTTCTCCCCTCAAAACCACTCCACCAACCGCCGCCAAAAACTTGTAGGA TCCTCCCACATCGTCAAACCTGACGACCTCACCCGCCCCGACGGCGTCATCCATGGCATTAACCGCCTCCTCGTCCCCCAATCAGTACAAGAAGATTTCA ACCGCCGTCGTAGCCTCAGATCCATCTCCGCCGTCCTCCCGGAGGGAGCTCCAGAAGTAGATCCGAGAACTCACCGGCTAAAAAAAGTTGCTCCGGCCGT CCCTGCCGGAGCCCCCCCTGTTCTTCCGATTTACGACGCTCTTTCACCGGGTCCATCTCTAGCTCCGGCGCCGGCGCCGGGACCGGGAGGACCCCATCAC CACTTCGACGGGCACACACAGGTCAAAGATTTCATCCACACTCTCTTACATTACGGCGGGTACAACGAAATGGCGGATATTCTCGTCAATTTGACTTCTT TAGCTACCGAGATGGGTCGGCTTGTGTCGGAAGGATATGTTCTGACAGTATTGGCGCCAAACGACGAAGCGATGGCGAAGCTGACGACGGATCAATTGAG TGAACCTGGAGCTCCGGAGCAGATTATATATTACCATATTATACCTGAGTATCAGACGGAGGAGAGTATGTACAATGCGGTGAGGAGATTCGGGAAGGTG AAGTACGATACTCTCCGGCTGCCGCATAAGGTTGTGGCTCAAGAGGCCGACGGGTCGGTGAAATTCGGGAGCGGTGACGTGTCGGGTTACTTGTTTGACC CGGATATTTATACCGACGGAAGAATTTCGGTTCAGGGGATCGACGGGATTCTGTTTCCCGAGATGGAGTTGACGGAGGAGGAGACGGCGGTGAGGAAACC GGCTGGTCCGGTTAAAGTCGTCACCAAGCAAAGAAGAGGTAATTTTGTTTAA
AA sequence Show only first row Show all	>Lus10016194 pacid=23142639 polypeptide=Lus10016194 locus=Lus10016194.g ID=Lus10016194.BGIv1.0 annot-version=v1.0 MDPPIYGVSIFLQLILLVSPLSAAALPTSTSPPPPPPAAVQQINSNSVLVALLDSHYTELSELIEKALLLPQLESAVSSHNLTIFSPQNHSTNRRQKLVG SSHIVKPDDLTRPDGVIHGINRLLVPQSVQEDFNRRRSLRSISAVLPEGAPEVDPRTHRLKKVAPAVPAGAPPVLPIYDALSPGPSLAPAPAPGPGGPHH HFDGHTQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHIIPEYQTEESMYNAVRRFGKV KYDTLRLPHKVVAQEADGSVKFGSGDVSGYLFDPDIYTDGRISVQGIDGILFPEMELTEEETAVRKPAGPVKVVTKQRRGNFV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11700		FLA18	FASCICLIN-like arabinogalactan...		Lus10016194 [exp]	0	1
AT4G10955			alpha/beta-Hydrolases superfam...		Lus10003188 [exp]	1.7	0.9380
AT1G02180			ferredoxin-related (.1)		Lus10038068 [exp]	2.8	0.9208
AT4G11090		TBL23	TRICHOME BIREFRINGENCE-LIKE 23...		Lus10033950 [exp]	5.3	0.9103
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Lus10029353 [exp]	7.9	0.8817
AT3G03690		UNE7	unfertilized embryo sac 7, Cor...		Lus10005676 [exp]	8.5	0.9152
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Lus10004159 [exp]	10.4	0.8965
AT2G33990		IQD9	IQ-domain 9 (.1)		Lus10015300 [exp]	10.5	0.9037
AT3G53620		ATPPA4	pyrophosphorylase 4 (.1)		Lus10024422 [exp]	11.3	0.8973
AT4G35320			unknown protein		Lus10026561 [exp]	11.5	0.8937
AT1G03900		ABCI18, ATNAP4	ATP-binding cassette I18, non-...		Lus10033908 [exp]	11.6	0.8842

Compare expression of checked genes

Lus10016194 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.