Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22000 191 / 3e-58 RHF2A, CIC7E11 RING-H2 group F2A (.1.2.3) AT4G14220 107 / 2e-26 RHF1A RING-H2 group F1A (.1) AT4G00335 64 / 4e-12 RHB1A RING-H2 finger B1A (.1.2.3) AT3G02290 64 / 1e-11 RING/U-box superfamily protein (.1.2) AT5G15790 63 / 2e-11 RING/U-box superfamily protein (.1.2) AT4G23450 61 / 2e-11 AIRP1, AtAIRP1 ABA Insensitive RING Protein 1, RING/U-box superfamily protein (.1.2.3) AT5G41350 61 / 1e-10 RING/U-box superfamily protein (.1) AT5G38895 58 / 1e-09 RING/U-box superfamily protein (.1.2.3) AT1G14200 54 / 1e-08 RING/U-box superfamily protein (.1) AT1G72310 54 / 3e-08 ATL3 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029351 [exp] 477 / 3e-171 AT5G22000 270 / 7e-89 RING-H2 group F2A (.1.2.3) Lus10013606 [exp] 320 / 1e-108 AT5G22000 337 / 4e-114 RING-H2 group F2A (.1.2.3) Lus10021245 [exp] 317 / 1e-106 AT5G22000 336 / 2e-113 RING-H2 group F2A (.1.2.3) Lus10013374 [exp] 239 / 5e-76 AT5G22000 397 / 7e-137 RING-H2 group F2A (.1.2.3) Lus10008447 [exp] 238 / 5e-76 AT5G22000 397 / 4e-137 RING-H2 group F2A (.1.2.3) Lus10010513 [exp] 119 / 2e-30 AT4G14220 236 / 3e-74 RING-H2 group F1A (.1) Lus10034049 [exp] 113 / 3e-28 AT4G14220 228 / 2e-71 RING-H2 group F1A (.1) Lus10017788 [exp] 66 / 2e-12 AT4G00335 204 / 3e-67 RING-H2 finger B1A (.1.2.3) Lus10024635 [exp] 64 / 4e-12 AT5G41350 178 / 7e-57 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G200200 [exp] 276 / 5e-91 AT5G22000 385 / 9e-133 RING-H2 group F2A (.1.2.3) Potri.016G066400 [exp] 275 / 1e-90 AT5G22000 386 / 4e-133 RING-H2 group F2A (.1.2.3) Potri.001G213800 [exp] 257 / 1e-83 AT5G22000 385 / 1e-132 RING-H2 group F2A (.1.2.3) Potri.010G092300 [exp] 136 / 6e-37 AT4G14220 248 / 6e-79 RING-H2 group F1A (.1) Potri.008G149300 [exp] 130 / 8e-35 AT5G22000 186 / 4e-55 RING-H2 group F2A (.1.2.3) Potri.001G101700 [exp] 65 / 5e-12 AT5G41350 142 / 2e-42 RING/U-box superfamily protein (.1) Potri.014G087000 [exp] 64 / 2e-11 AT4G00335 222 / 2e-73 RING-H2 finger B1A (.1.2.3) Potri.010G140300 [exp] 63 / 2e-11 AT5G38895 129 / 4e-37 RING/U-box superfamily protein (.1.2.3) Potri.003G129900 [exp] 62 / 4e-11 AT5G41350 146 / 6e-44 RING/U-box superfamily protein (.1) Potri.017G100100 [exp] 61 / 1e-10 AT5G15790 230 / 6e-76 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10016195 pacid=23142635 polypeptide=Lus10016195 locus=Lus10016195.g ID=Lus10016195.BGIv1.0 annot-version=v1.0 ATGGAGGAGGAAGGTAAGAAAGCTGCAGCGAAGATGACGTCAGCTGCAGCATTTGTGGAAGGAGGAATCCAGGATGAATGTGAGGATTCTTGTAGCATTT GTCTCGAGGAATTCTCTTCAAATGATCCTTCAACGCTGACCAAATGCAGGCATGAATATCACCTCCAGTGCATCCTTGAATGGTGCCAGAGAAGCTCAGA CTGTCCAATGTGTTTGCAGCCAGTTAGCTTGAAAGACCCTTCGAGTCAAGAACTATTTGAAGCAGTGGAGCAAGAGAGGAAAATCAGGACTACTGCTATT CGAACTCCCACTGTGTTTCGCCATCCAACTTTCGGAGACTTTGATTTGCAGCATGTTGGTTCAAGTAATGCTGCTCGACTCGAAGCACGAATTCTCCAGC ACTTGGCTGCCGCAGCAGCCATGGGGAGAACTCACTTTGGTAGTGGTAGAAGGGAAAGCCACAGAAGTAGTCATAGTAGGTCTGCTGCTGCAGCAACTCA ACATCGCCCACACTTGTTGGTATTCTCAAATGCAACATCTTCTGGACAAGTTGGACGAGAAAGTGAGCCAGCTGCCATCAATGGAGCTACTCCATCCACC CCTCTGGCAGGCTCCGGGGATGATGACTCCTCGCCACATCATGATCGCAGTGCGTATGCTCTCAGGCCTACGTTTCGTTCCTTGAATGAACGGATTACTC GAAGTCCTGATACAGCAGGGCCATCAGAGTCGTTTTCGGAGTCTTTAAAAACCAGACTCAGTTCATTGTCAATGAGGTACAGAGAATCATTCTCAAGAAG CACAAGAGGGTGGACAGATAGGTTCTTCTCCAGAAGCAACTCAATGTCAGGTATTGGCTCCGAAGTACAAAGAGAAGTAGATGCTGGACCTGATGGCTCC GATTCGCCACCTTCTGCTGCTGCTGCAACTTCAGCCACCACTTAA
AA sequence Show only first row Show all	>Lus10016195 pacid=23142635 polypeptide=Lus10016195 locus=Lus10016195.g ID=Lus10016195.BGIv1.0 annot-version=v1.0 MEEEGKKAAAKMTSAAAFVEGGIQDECEDSCSICLEEFSSNDPSTLTKCRHEYHLQCILEWCQRSSDCPMCLQPVSLKDPSSQELFEAVEQERKIRTTAI RTPTVFRHPTFGDFDLQHVGSSNAARLEARILQHLAAAAAMGRTHFGSGRRESHRSSHSRSAAAATQHRPHLLVFSNATSSGQVGRESEPAAINGATPST PLAGSGDDDSSPHHDRSAYALRPTFRSLNERITRSPDTAGPSESFSESLKTRLSSLSMRYRESFSRSTRGWTDRFFSRSNSMSGIGSEVQREVDAGPDGS DSPPSAAAATSATT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10016195 [exp]	0	1
AT5G19500			Tryptophan/tyrosine permease (...		Lus10041401 [exp]	3.0	0.9144
AT5G35170			adenylate kinase family protei...		Lus10036326 [exp]	3.6	0.9226
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10043323 [exp]	4.9	0.9193
AT5G51820		STF1, PGM1, ATP...	STARCH-FREE 1, ARABIDOPSIS THA...		Lus10027400 [exp]	6.9	0.8831
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10019476 [exp]	8.9	0.9066
AT2G38330			MATE efflux family protein (.1...		Lus10012227 [exp]	10.0	0.9010
AT5G19500			Tryptophan/tyrosine permease (...		Lus10036527 [exp]	10.2	0.8648
AT1G54570			Esterase/lipase/thioesterase f...		Lus10018998 [exp]	10.5	0.8517
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10040680 [exp]	10.7	0.8694
AT2G21340			MATE efflux family protein (.1...		Lus10041955 [exp]	12.0	0.8867

Compare expression of checked genes

Lus10016195 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.