Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20720 307 / 8e-105 CHCPN10, ATCPN21, CPN21, CPN20 CHLOROPLAST CHAPERONIN 10, chaperonin 20 (.1.2.3) AT1G14980 54 / 3e-09 CPN10 chaperonin 10 (.1) AT3G60210 50 / 2e-07 GroES-like family protein (.1) AT1G23100 45 / 3e-06 GroES-like family protein (.1) AT2G44650 46 / 5e-06 CHL-CPN10 chloroplast chaperonin 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013607 [exp] 307 / 8e-105 AT5G20720 373 / 5e-132 CHLOROPLAST CHAPERONIN 10, chaperonin 20 (.1.2.3) Lus10021244 [exp] 306 / 3e-104 AT5G20720 372 / 1e-131 CHLOROPLAST CHAPERONIN 10, chaperonin 20 (.1.2.3) Lus10029350 [exp] 163 / 1e-48 AT4G22060 45 / 3e-05 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10036055 [exp] 49 / 4e-07 AT1G23100 134 / 7e-42 GroES-like family protein (.1) Lus10019497 [exp] 45 / 7e-06 AT2G44650 171 / 5e-56 chloroplast chaperonin 10 (.1) Lus10026822 [exp] 45 / 4e-05 AT2G26810 267 / 5e-87 Putative methyltransferase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G138600 [exp] 325 / 1e-111 AT5G20720 395 / 1e-140 CHLOROPLAST CHAPERONIN 10, chaperonin 20 (.1.2.3) Potri.018G063200 [exp] 318 / 5e-109 AT5G20720 383 / 5e-136 CHLOROPLAST CHAPERONIN 10, chaperonin 20 (.1.2.3) Potri.004G134900 [exp] 73 / 3e-14 AT4G17565 99 / 8e-23 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.002G014500 [exp] 62 / 1e-10 AT2G17030 130 / 9e-34 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.001G274300 [exp] 52 / 1e-08 AT1G14980 165 / 6e-55 chaperonin 10 (.1) Potri.009G068900 [exp] 52 / 2e-08 AT1G14980 161 / 3e-53 chaperonin 10 (.1) Potri.004G137700 [exp] 50 / 9e-07 AT4G22165 69 / 9e-13 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.014G044300 [exp] 47 / 2e-06 AT3G60210 211 / 1e-71 GroES-like family protein (.1) Potri.008G130500 [exp] 46 / 2e-06 AT1G23100 157 / 7e-52 GroES-like family protein (.1) Potri.002G135700 [exp] 46 / 3e-06 AT3G60210 150 / 4e-48 GroES-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03478 [flax] [poplar] DUF295 Protein of unknown function (DUF295) CL0296 [flax] [poplar] GroES PF00166 [flax] [poplar] Cpn10 Chaperonin 10 Kd subunit
Representative CDS sequence Show only first row Show all	>Lus10016196 pacid=23142734 polypeptide=Lus10016196 locus=Lus10016196.g ID=Lus10016196.BGIv1.0 annot-version=v1.0 ATGGCGGCCACTCAGCTCACAGCATCATCAGTCTCCGTTTCACCCAGGAACTTATCTTCTTTCAATCCGTCTACCGTACATTTCGCATCATTCCCCACAT TGAAACCAGCTCGCTCACTCCGCTCACTGGTAGCCGTCCAAGCCGCCACTCTCGTCGCCCCCAAGTACACTGCGGTTAAGCCATTAGGAGATAGAGTGCT GGTGAAGATAAAGGAAGTGAAAGAGACAACCAGGGGTGGAATTATCCTCCCTGATTCTGCACAGAATAAGCCTCAAAGTGGTGAGGTTATTGCTGTTGGA AAAGGGAAGCCCATTGGTGACAACAAAACAGTAGAGATTAGTGTCAAGACTGGTTCGCAGGTTGTTTACTCAAGGCATGCAGGGACCGAGGTCGAATTAG ATGGCACTACCCATTTGATCCTGAAAGAAGACGACATTATTGGTGTTCTAGAGACGAACGATATCAAGGATCTCAAGCCTCTCGGCAGGCGAGTTTTCAT CAAGGTTGCCGATGCTGAAGATAGGACTGCCGGAGGGTTGATCCTCGCTGCTTCATCGAAAGAGAAGCCTTCCATTGGCACGGTGGTTGCGGTTGGACCG GGATCTCTCGACGATGAGGGTAACAGGAAACCAGTTCCGGTCAGCCCGGGGAACACGGTGTTGTACTCCCAGTATCAAGGGAATGACTTCAAGAGCAGTG ATGGCAGCAACTACATTGCTCTTAGGAGGGCTCTATTTTTGGGCGAGGGTCACTCTGTTTCAGTTCCGGCAACCGGGGGAGTTGTCGCGGATTGTATCTA TTATGACGACGACTATTGGGGAAGGATGGATGAGGATGATCCCACATACGGAGGACACGATGTCGGGGTATTCAACTTGAGAGATGGGAAGGTTACAGAG ATCGACGAGGTGTTTACTGGATATTATGCAAAGATTCAGCCGCCGGCGAGTTGGATTGTTCCGACTCCGTCGTTGGTGGGGTTTTAG
AA sequence Show only first row Show all	>Lus10016196 pacid=23142734 polypeptide=Lus10016196 locus=Lus10016196.g ID=Lus10016196.BGIv1.0 annot-version=v1.0 MAATQLTASSVSVSPRNLSSFNPSTVHFASFPTLKPARSLRSLVAVQAATLVAPKYTAVKPLGDRVLVKIKEVKETTRGGIILPDSAQNKPQSGEVIAVG KGKPIGDNKTVEISVKTGSQVVYSRHAGTEVELDGTTHLILKEDDIIGVLETNDIKDLKPLGRRVFIKVADAEDRTAGGLILAASSKEKPSIGTVVAVGP GSLDDEGNRKPVPVSPGNTVLYSQYQGNDFKSSDGSNYIALRRALFLGEGHSVSVPATGGVVADCIYYDDDYWGRMDEDDPTYGGHDVGVFNLRDGKVTE IDEVFTGYYAKIQPPASWIVPTPSLVGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20720		CHCPN10, ATCPN2...	CHLOROPLAST CHAPERONIN 10, cha...		Lus10016196 [exp]	0	1
AT3G02450			cell division protein ftsH, pu...		Lus10003049 [exp]	1.4	0.9415
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Lus10029064 [exp]	2.0	0.9387
AT2G19870			tRNA/rRNA methyltransferase (S...		Lus10011129 [exp]	2.8	0.9324
AT1G49510		EMB1273	embryo defective 1273 (.1)		Lus10012054 [exp]	6.9	0.8831
AT1G06190			Rho termination factor (.1.2)		Lus10022920 [exp]	8.5	0.9200
AT3G13470		Cpn60beta2	chaperonin-60beta2, TCP-1/cpn6...		Lus10013404 [exp]	9.4	0.9093
AT3G05510			Phospholipid/glycerol acyltran...		Lus10029891 [exp]	10.1	0.9234
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Lus10014819 [exp]	10.2	0.9361
AT3G25920		RPL15	ribosomal protein L15 (.1)		Lus10010916 [exp]	10.5	0.9313
AT2G28000		Cpn60alpha1, SL...	SCHLEPPERLESS, chaperonin-60al...		Lus10037386 [exp]	13.4	0.8787

Compare expression of checked genes

Lus10016196 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.