Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11690 107 / 2e-28 unknown protein AT2G27180 73 / 5e-16 unknown protein AT5G06380 70 / 3e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029349 [exp] 404 / 2e-145 AT3G11690 105 / 7e-28 unknown protein Lus10021243 [exp] 218 / 9e-72 AT3G11690 112 / 6e-30 unknown protein Lus10013608 [exp] 216 / 6e-71 AT3G11690 109 / 5e-29 unknown protein Lus10008446 [exp] 72 / 9e-16 AT2G27180 91 / 3e-23 unknown protein Lus10013375 [exp] 64 / 1e-12 AT2G27180 96 / 3e-25 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066300 [exp] 129 / 9e-38 AT3G11690 62 / 5e-12 unknown protein Potri.006G200100 [exp] 98 / 1e-25 AT3G11690 / unknown protein Potri.009G151600 [exp] 90 / 1e-22 AT2G27180 54 / 1e-09 unknown protein Potri.004G190500 [exp] 69 / 2e-14 ND / Potri.001G349700 [exp] 45 / 6e-06 AT3G01516 71 / 2e-15 unknown protein Potri.008G111500 [exp] 40 / 0.0005 AT3G25597 49 / 3e-07 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016197 pacid=23142690 polypeptide=Lus10016197 locus=Lus10016197.g ID=Lus10016197.BGIv1.0 annot-version=v1.0 ATGATATTCGATCTGGACAATAACGGCGGAGCACGACCGACCATACTGGCGACAACAAGGGAGCCGTCCCTAGTCGTGATCCGACCATCCTCGCCTAAAC TAACACGCCGGAACTCCTTCCTCCCGCCGCAACGTCACCGCCGGGGATACTCTGTCTCCGATGCCTCCTCCTGCAGCGGCCGGTTCGGCGAGCTCGCCGG AGGTACCACGGCGGAGTGCGTGTCAATCGCCTGCTGCTGCCCTTGCGGAATCGCTAATCTCCTCTTCCTCACCATCTATAAGGTTCCCGTGGGGCTGTGC CGGAAGGCGCTGAGGAGGAAGAGGAGGCAGCATCTGATAAAAAAAGGAGTTTTGATTCCTCGCCGGCGGTGTCAGTGCGGCTGCGACGACACCGAGATTC AGATTCACCCGCTCCACGGCGGCGGATCGCAGTCGTTCGATGTCAACATGATGCGGGTGGTTTTTGAGGATGACGATGAGAAGCGAGGTGGGGAGGAGAT GATGAGGCTGGAGAAGGAGATGTGGGATACTTTTTACGAGACTGGGTTCTGGAGGAGTCCGTCTCAGAGGGAGCCGGTCGTCGCTGCCACCGGCGTCGGG AGGAAGAGCGGCACAGAAGCTCCGATTGCTAACGAAATATAA
AA sequence Show only first row Show all	>Lus10016197 pacid=23142690 polypeptide=Lus10016197 locus=Lus10016197.g ID=Lus10016197.BGIv1.0 annot-version=v1.0 MIFDLDNNGGARPTILATTREPSLVVIRPSSPKLTRRNSFLPPQRHRRGYSVSDASSCSGRFGELAGGTTAECVSIACCCPCGIANLLFLTIYKVPVGLC RKALRRKRRQHLIKKGVLIPRRRCQCGCDDTEIQIHPLHGGGSQSFDVNMMRVVFEDDDEKRGGEEMMRLEKEMWDTFYETGFWRSPSQREPVVAATGVG RKSGTEAPIANEI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11690			unknown protein		Lus10016197 [exp]	0	1
AT2G43330		ATINT1	inositol transporter 1 (.1)		Lus10027026 [exp]	2.0	0.9314
AT1G13700		PGL1	6-phosphogluconolactonase 1 (....		Lus10037065 [exp]	2.4	0.9153
AT5G46180		DELTA-OAT	ornithine-delta-aminotransfera...		Lus10023299 [exp]	2.6	0.9318
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10003158 [exp]	10.9	0.8946
AT2G43330		ATINT1	inositol transporter 1 (.1)		Lus10025565 [exp]	11.3	0.8761
AT1G23800		ALDH2B7	aldehyde dehydrogenase 2B7 (.1...		Lus10029166 [exp]	18.6	0.9055
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10040499 [exp]	23.7	0.8998
AT2G21600		ATRER1B	endoplasmatic reticulum retrie...		Lus10041766 [exp]	25.5	0.8622
AT3G48240			Octicosapeptide/Phox/Bem1p fam...		Lus10000441 [exp]	28.6	0.9115
AT4G27650		PEL1	PELOTA, Eukaryotic release fac...		Lus10020376 [exp]	35.2	0.8398

Compare expression of checked genes

Lus10016197 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.