Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06820 911 / 0 CCR2, CRTISO CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) AT1G57770 207 / 5e-59 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT5G49555 72 / 4e-13 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029347 [exp] 1122 / 0 AT1G06820 913 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) Lus10037348 [exp] 195 / 3e-54 AT1G57770 900 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10035770 [exp] 182 / 1e-49 AT1G57770 832 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10041743 [exp] 74 / 1e-13 AT5G49555 933 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10024010 [exp] 72 / 3e-13 AT5G49555 607 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10014308 [exp] 61 / 2e-09 AT5G49555 850 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066000 [exp] 938 / 0 AT1G06820 903 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) Potri.006G199600 [exp] 923 / 0 AT1G06820 877 / 0.0 CAROTENOID AND CHLOROPLAST REGULATION 2, carotenoid isomerase (.1) Potri.003G005800 [exp] 220 / 5e-64 AT1G57770 869 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.007G025300 [exp] 81 / 9e-16 AT5G49555 943 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00890 [flax] [poplar] FAD_binding_2 FAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10016199 pacid=23142749 polypeptide=Lus10016199 locus=Lus10016199.g ID=Lus10016199.BGIv1.0 annot-version=v1.0 ATGAGCAGCTTAGGAACAACAACCAGCTACAGAAGCTCCCAATTCCTTTCCCAATTGGGCGCTTTCAGACCCTCCACAGCTCATACTCAGAGAATCCAGC GCTATGAACTTCTTTTCCCCAAGTGTCAATACAGAAGAGAAAGAAAAAGAACCGATTGGTCCGTGAGCTCGGCCGTGAGCGTTGTGGATGATGGGAGAAT TGGAAGAGGAGCGGTGAGTAAGGAAAGAGGGTATTATGATGCGATTGTTATTGGGTCTGGGATTGGTGGGTTGGTTGCTTCTACCCAGTTGGCAGTGAAA GGAGCTAAAGTTCTTGTCTTGGAGAAGTATGTGATTCCTGGTGGCAGTTCTGGGTTTTATGAGCGTGATGGCTTCACTTTCGATGTTGGTTCCTCTGTCA TGTTTGGTTTCAGTGACAAGGGGAACTTAAACTTGATAACCAAGGCATTGGCAGCAGTTGGCCGTGAGTTGGAGGTGATCCCTGATCCAACCACGGTCCA TTTTCACCTGCCAAATAACCTCTCGGTTCGAGTTCATCGAGAGTACAACGATTTCCTTGCAGAATTGGTCGCTAGATTCCCCCATGAGAAGGAAGGCATC ACTAAGTTCTATGGTGTATCTTGGCAGATATTCAATGCCTTGAACTCGTTGGAACTCAAGTCGCTCGAGGAGCCGATCTACTTGTTTGGCCAGTTCTTTC AGAAGCCTCTCGAGTGTTTAACTCTTGCGTATTATCTACCTCAGAATGCCGGAGACATTGCGAGGAAGTACATAAAAGACCCTGAACTCTTGTCTTTCAT TGATGCTGAGTGTTTCATAGTGAGCACAGTGAATGCTTTGCAGACGCCGATGATCAATGCAGCCATGGTCCTATGTGACAGACATTTCGGAGGAATCAAC TATCCTGTTGGTGGTGTCGGTCAAATTGCGAAATCCCTAGCGAAAGGTCTGGTTGATCAAGGGAGTGAGATAGCTTACAAGGCGAATGTGACCAACATAA TTCTCGAAAATAGGAAGGCGGTAGGAGTTGGACTCTCGGATGGAAGGCAAATATTCGCAAAGACCGTTATATCGAATGCAACAAGATGGGATACCTTTGG CAAATTGTTGAAAGGAAAGCAGCTTCCGAAAGAGGAAGAGAATTTCCAGAAAGTTTATGTCCAAGCACCCTCTTTTCTGTCTATTCACTTGGGTGTTAAG TCAGAGGTTCTACCTCCTGACACAGACTGCCACCATTTTGTGCTTGAGGATGACTGGGAAAGATTAGAGGCGCCATATGGAAGTATCTTTCTGAGCATTC CCACAATACTGGATAAATCATTGGCTCCAGAAGGATGTCATATTCTCCACATATTTACGACTTCGTCGATTGAAGATTGGGAGGGAATTCCACGAAAAGA CTACGAGGCGAAGAAGGAAGCTGTTGCTGATGAGATTATTGGCAGATTGGAGAAAAAGCTGTTCCCGGGCCTTAGATCGGCTATTGTTTTCAAGGAGGTG GGATCGCCAAAGACTCACAGGCGATACCTTGCTCGAAACGACGGGACATATGGACCTATGCCACGGAACATTCCGAAAGGTTTATTAGGAATGCCATTCA ATACAACAGGGATAGATGGGCTTTACTGTGTCGGTGACAGTTGCTTTCCTGGACAAGGAGTTATAGCAGTGGCCTTTTCCGGAGTAATGTGTGCCCATCG TGTCGCAGCTGATGTCGGTCTCGAAAAGAAGTCGCAGGTTTTGGATACTGCCTTGCTTGGGCTTCTTGGTTGGCTAAGGACACTGGCTTGA
AA sequence Show only first row Show all	>Lus10016199 pacid=23142749 polypeptide=Lus10016199 locus=Lus10016199.g ID=Lus10016199.BGIv1.0 annot-version=v1.0 MSSLGTTTSYRSSQFLSQLGAFRPSTAHTQRIQRYELLFPKCQYRRERKRTDWSVSSAVSVVDDGRIGRGAVSKERGYYDAIVIGSGIGGLVASTQLAVK GAKVLVLEKYVIPGGSSGFYERDGFTFDVGSSVMFGFSDKGNLNLITKALAAVGRELEVIPDPTTVHFHLPNNLSVRVHREYNDFLAELVARFPHEKEGI TKFYGVSWQIFNALNSLELKSLEEPIYLFGQFFQKPLECLTLAYYLPQNAGDIARKYIKDPELLSFIDAECFIVSTVNALQTPMINAAMVLCDRHFGGIN YPVGGVGQIAKSLAKGLVDQGSEIAYKANVTNIILENRKAVGVGLSDGRQIFAKTVISNATRWDTFGKLLKGKQLPKEEENFQKVYVQAPSFLSIHLGVK SEVLPPDTDCHHFVLEDDWERLEAPYGSIFLSIPTILDKSLAPEGCHILHIFTTSSIEDWEGIPRKDYEAKKEAVADEIIGRLEKKLFPGLRSAIVFKEV GSPKTHRRYLARNDGTYGPMPRNIPKGLLGMPFNTTGIDGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADVGLEKKSQVLDTALLGLLGWLRTLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06820		CCR2, CRTISO	CAROTENOID AND CHLOROPLAST REG...		Lus10016199 [exp]	0	1
AT3G15690			Single hybrid motif superfamil...		Lus10023118 [exp]	4.9	0.8634
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Lus10037081 [exp]	5.8	0.8241
AT3G11720			Polyketide cyclase/dehydrase a...		Lus10016185 [exp]	12.6	0.8192
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10005928 [exp]	13.6	0.8050
AT1G70630			Nucleotide-diphospho-sugar tra...		Lus10036860 [exp]	18.3	0.7800
AT5G06270			unknown protein		Lus10029413 [exp]	21.1	0.8211
AT5G59400			unknown protein		Lus10016531 [exp]	27.0	0.7967
AT1G78915			Tetratricopeptide repeat (TPR)...		Lus10034802 [exp]	29.4	0.7775
AT1G73530			RNA-binding (RRM/RBD/RNP motif...		Lus10026364 [exp]	29.6	0.8106
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10002108 [exp]	30.7	0.7784

Compare expression of checked genes

Lus10016199 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.