Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38910 853 / 0 CPK20 calcium-dependent protein kinase 20 (.1) AT5G04870 812 / 0 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1) AT3G10660 791 / 0 ATCPK2, CPK2 calmodulin-domain protein kinase cdpk isoform 2 (.1) AT4G35310 690 / 0 CPK5, ATCPK5 calmodulin-domain protein kinase 5 (.1) AT2G17290 689 / 0 ATCPK6, ATCDPK3, CPK6 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) AT4G38230 686 / 0 CPK26, ATCPK26 ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 26, calcium-dependent protein kinase 26 (.1.2.3) AT1G35670 653 / 0 CPK11, ATCDPK2, ATCPK11 calcium-dependent protein kinase 2 (.1) AT4G09570 652 / 0 CPK4, ATCPK4 calcium-dependent protein kinase 4 (.1) AT5G23580 635 / 0 ATCDPK9, CPK12, CDPK9, ATCPK12 CALCIUM-DEPENDENT PROTEIN KINASE 12, ARABIDOPSIS THALIANA CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9, calmodulin-like domain protein kinase 9 (.1) AT5G19360 616 / 0 CPK34 calcium-dependent protein kinase 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029346 [exp] 1083 / 0 AT2G38910 834 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10015992 [exp] 966 / 0 AT2G38910 880 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10012285 [exp] 961 / 0 AT2G38910 884 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10008958 [exp] 797 / 0 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1) Lus10028862 [exp] 796 / 0 AT5G04870 940 / 0.0 calcium dependent protein kinase 1 (.1) Lus10013603 [exp] 754 / 0 AT3G10660 803 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10021248 [exp] 754 / 0 AT3G10660 809 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10001384 [exp] 702 / 0 AT4G35310 949 / 0.0 calmodulin-domain protein kinase 5 (.1) Lus10022986 [exp] 700 / 0 AT4G35310 950 / 0.0 calmodulin-domain protein kinase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G065700 [exp] 892 / 0 AT2G38910 892 / 0.0 calcium-dependent protein kinase 20 (.1) Potri.006G199400 [exp] 892 / 0 AT2G38910 899 / 0.0 calcium-dependent protein kinase 20 (.1) Potri.010G244800 [exp] 827 / 0 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.008G014700 [exp] 827 / 0 AT5G04870 922 / 0.0 calcium dependent protein kinase 1 (.1) Potri.006G200600 [exp] 745 / 0 AT5G04870 842 / 0.0 calcium dependent protein kinase 1 (.1) Potri.016G066700 [exp] 743 / 0 AT3G10660 834 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Potri.004G207300 [exp] 701 / 0 AT2G17290 969 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.009G168600 [exp] 695 / 0 AT2G17290 968 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.T012800 [exp] 681 / 0 AT1G35670 795 / 0.0 calcium-dependent protein kinase 2 (.1) Potri.019G083200 [exp] 672 / 0 AT4G09570 835 / 0.0 calcium-dependent protein kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10016200 pacid=23142743 polypeptide=Lus10016200 locus=Lus10016200.g ID=Lus10016200.BGIv1.0 annot-version=v1.0 ATGGGGAATACATGTGCTGGACCAAACAATGTATTCGTACAAACAGTTACAGCTGCCGTGTGGCGGAACCGGCGACCGGACGATCGACTCCCGGCTCCAG ACAAGAACGAAGGCGACAACAGCAGCAAGAAGGAAGGTTCGAGCAAGAAGGACGATTCAAAAGGAGGAGGAGCTTCCGAAGAGGGATCGAAGAAATGGGA GGACTCAAGAAGAGACGGTGGCGAACCAAGCCCGAAAACCCCACCTCCGCAGGTCAAGATGGGTGAAAACAACGATAAACCTATGAATCATGAGAAGTCA ATCAAGCCGGAAATGCGAGATGTTCCGATAAGTAGTACAAGTAGACGAGGAGGGCAGGAGGAATCTAACAAGGCCAAGAAGCCTGCTCAGATGAAGAGAC TCGCAAGTGCAGGGGTACAAGCAGGATCAGTATTGGGGAGAAAGACAGGGAACTTAAAGGAGATTTACAGTTTGGGGAGAAAACTCGGGCAAGGTCAGTT CGGAACGACTTTTCTATGTATCGAGAAGGCGACGAGGAAAGAATTCGCTTGCAAATCGATTGCGAAGAGGAAGCTGGCGACTCAGGAAGATGTGGAGGAT GTTAGGAGGGAGATTCAGATTATGCACCATTTGGAAGGGCATCCCAATGTGATTAAGATTATTGATGCTTACGAGGATGCGGTTGCTGTTCATGTTGTTA TGGAGCTTTGTGCAGGTGGAGAGCTTTTCGATAGGATCATTCAGAGAGGGCATTACACGGAGAGAAAGGCTGCTGAGCTTGCCAGGCTCATAGTTGGAGT TGTGGAAGCTTGTCATTCTTTGGGCGTTATGCATAGAGACCTTAAGCCTGAGAATTTCCTGTTTGTTAGTCAGAAAGAGGATGCCACTCTTAAGACTATC GATTTCGGGCTCTCGATGTTCTTCAAGCCTGGCGAAACGTTCACTGATGTTGTTGGGAGCCCCTACTACGTAGCACCCGAGGTGTTGCGTAAGCATTATG GTTCACCATGTGATGTTTGGAGCGCTGGTGTTATCATATATATCTTATTAAGTGGTGTTCCTCCGTTTTGGGATGAAACCGAGCAAGGAATATTCGAACA GGTTTTAAAAGGTGACCTAGACTTCGCTTCCGAACCATGGCCGAATATATCAGATGGTGCTAAAGATTTGGTTCGAAGGATGCTTGTTAGAGACCCTAAA AAGCGCCTCACCGCCCATGAAGTTCTACGCCACCCTTGGGTACAAGATGGGCATGCTCCTGATAAACCTCTTGATTCTGCTGTTATAAGTCGCTTGAAAC AGTTCTCAGCCATGAACAAGCTGAAGAAAATCGCAATACGAGTTATTGCTGAAAGCATGTCCGAAGAGGAAATTGCAGGCTTGAGAAATCTGTTCAAGAT GATAGATGCAGACGGTAGCGGACATATCACTCTCGAGGAACTGAAGAAAGGTTTAGAGAAAGCAGGAGCTAATCTTAAGGAGGGTGAAATCGTCGGGTTG ATGCAAGCAGCTGATGTCGACAACAGTGGAACTATCGACTATGGCGAGTTCATAGCTGCAATGATTCACTTGAACAAAATACAGAAGGAAGACCATCTAT TTGCAGCGTTCTCGTACTTCGACAAAGATGGGAGCGGATATATCACCGCGGACGAGCTCCAACAGGCCTGCGAGCAGTTTGGGTTAGGGGATCTTCACAT CACGGACATAATCGACGAAGTTGACCAGGATAATGATGGGCGGATCGATTACAGCGAATTCGTGGCTATGATGCAAGACTCTAAAATCAGGCCAGCTGGA AAATGA
AA sequence Show only first row Show all	>Lus10016200 pacid=23142743 polypeptide=Lus10016200 locus=Lus10016200.g ID=Lus10016200.BGIv1.0 annot-version=v1.0 MGNTCAGPNNVFVQTVTAAVWRNRRPDDRLPAPDKNEGDNSSKKEGSSKKDDSKGGGASEEGSKKWEDSRRDGGEPSPKTPPPQVKMGENNDKPMNHEKS IKPEMRDVPISSTSRRGGQEESNKAKKPAQMKRLASAGVQAGSVLGRKTGNLKEIYSLGRKLGQGQFGTTFLCIEKATRKEFACKSIAKRKLATQEDVED VRREIQIMHHLEGHPNVIKIIDAYEDAVAVHVVMELCAGGELFDRIIQRGHYTERKAAELARLIVGVVEACHSLGVMHRDLKPENFLFVSQKEDATLKTI DFGLSMFFKPGETFTDVVGSPYYVAPEVLRKHYGSPCDVWSAGVIIYILLSGVPPFWDETEQGIFEQVLKGDLDFASEPWPNISDGAKDLVRRMLVRDPK KRLTAHEVLRHPWVQDGHAPDKPLDSAVISRLKQFSAMNKLKKIAIRVIAESMSEEEIAGLRNLFKMIDADGSGHITLEELKKGLEKAGANLKEGEIVGL MQAADVDNSGTIDYGEFIAAMIHLNKIQKEDHLFAAFSYFDKDGSGYITADELQQACEQFGLGDLHITDIIDEVDQDNDGRIDYSEFVAMMQDSKIRPAG K

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38910		CPK20	calcium-dependent protein kina...		Lus10016200 [exp]	0	1
AT4G08630			unknown protein		Lus10001720 [exp]	4.5	0.8282
AT3G58760			Integrin-linked protein kinase...		Lus10037851 [exp]	19.9	0.8198
AT1G16970		KU70, ATKU70	ARABIDOPSIS THALIANA KU70 HOMO...		Lus10005783 [exp]	20.1	0.8258
AT1G75680		ATGH9B7	glycosyl hydrolase 9B7 (.1)		Lus10014265 [exp]	28.1	0.7542
AT3G59030		ATTT12, TT12	TRANSPARENT TESTA 12, A. THALI...		Lus10033596 [exp]	35.1	0.8098
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10033906 [exp]	47.1	0.7125
AT3G07750			3'-5'-exoribonuclease family p...		Lus10012336 [exp]	53.0	0.8031
AT5G65070	MADS	FCL4, MAF4, AGL...	MADS AFFECTING FLOWERING 4, AG...		Lus10003122 [exp]	65.0	0.7324
AT5G66840			SAP domain-containing protein ...		Lus10008134 [exp]	69.6	0.7906
AT5G56950		NFA3, NFA03, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10001231 [exp]	72.8	0.7235

Compare expression of checked genes

Lus10016200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.