Plant FIBer expression Database

Lus10016201 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G54750 468 / 6e-159 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029345
[exp]
1116 / 0 AT3G54750 482 / 2e-164 unknown protein
Lus10015991
[exp]
739 / 0 AT3G54750 488 / 4e-166 unknown protein
Lus10012287
[exp]
107 / 3e-27 AT3G54750 68 / 3e-14 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G065600
[exp]
658 / 0 AT3G54750 557 / 0.0 unknown protein
Potri.006G199200
[exp]
650 / 0 AT3G54750 572 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10016201 pacid=23142650 polypeptide=Lus10016201 locus=Lus10016201.g ID=Lus10016201.BGIv1.0 annot-version=v1.0
ATGGCCAAAGTAGCGCCTCCGGCTCCTGGTCCGTTGAATGTTGGTTCGATGGCTAAAAGGAAGACGCCGTCTGAGCTAAGGGGAGAGCAGTTAAGGAGGA
CGAGTCTTGCCGAGCTTTTTGGGGATTCTCAGTCTCAGTCATCTAATGAGGGAGAGAATGGGTTTAAGAAACCGGATGCGTTCAGAAACCGGAAGTACAC
TGATACTCGCTTGGATGAACTGTATCCCGCAAAGAAATCGAGATTGAGGATGCCTAATGTGAAAGATAATTTAAAGGAAAAGCAATCAACAGAGCAACCC
ACCAATCATTCTACCCTTGCAAGCTTGGCAGCAAAGAGGTTGAAAATTTCATGTTTAGATAAATTTGCTGATTCTGTGGACGTGTCGAGAGATGGTAGCG
CAAAAGCTCACCAAACAGGTGAAAAATGTAGTCAGAGTATATTCCGCAGTGTTACTGAGCTTTCATCGTTCGGGGACCAATCTTTGGGACTTGCAGCTGT
TGATATGGACAAAGCCTTGAAAGGGTTAACGGCTTCCTGTGAACCTCTGAGAAATTCCAGTTTCAATGCTGATTCATCTGGACAGCCTGCGCATTACTTT
GAAAATTTCCGCTCCGAGTGCTCTATACCTGGCAAGAAACCTCCCCTCGACTTTACATTGAAAACAAAAATGCGGCTGATGTGTGCTTGCGCAGTGAGTG
GGCTTCATAGGACGCTTATGTCTAGTACATGCAACAGCAGTCCACAGTTTGTGTTTCAACAGGGTTCTGCAGAATACAGCAGTAGCTCATCTCAAACTCC
GGGTTCTCAAATTTGTAGTCCTAAATCTCTTCATTCTTGGGTTTATCCTCAGTCTACACTACCACCTGCTGTCATTTCAGTATTGGCTTCGTCAGCTGCA
GAGGGAGATTTTCTTAAGAAAAGGCATCTGGCTTGGGAGGAATCGTTTCGAAGTCTCTATTACTTGCTTCGTAAGAACATTTGCAATATATTTTATGTGA
GTACTTCACATTTTGTGGTAATGTTCACCAGTGAGAATGGCTCAGGGAGTCCCAAGTCCTTCTGCAATGCTTACATCTCCCAATCCACTAGAAGTCTCAG
GTCCTTGTTACGAGAACATGATGTATGCTTCTCTATGCCACTTTGCCATTCTAAAATGGAGGAAGTGGCCACTGAACATCTAGTTGAGCTTTCAGAGATT
GCGAGGCAAAACTTAGGCCAGACTCGTCAGCCTTCCAGCTCGTTTAACGATGTTGATAACACCACACAGTCTTTACTGGCCTTCAATGGGAAGAAAGATG
TCCAGGGACTCTATGATTTCCTCTTAAATTACAGATCTTTCTTGACTCTCTTGTCTGGCATCGACGTTCCAGTACTTTATTCACCTGTCCCTTTCACAAA
TGCTGGTCTTTCTGCTCCGGAGATAAGATGCGTGGATATGAAGAAACCTGACCATACCACAACTTCCCAAAAAGATGCCTCATCGGATTCTCTCAGCTCA
ATCATCGAAATCAAAGGAACATGCATCCCGCCATGGATTATCAGTCGCATTTGTGCAATCATGAGCTCTGAAGCGACAAGCTACGAGGCGAGTTTTGCTA
CGGAACCCAGATCGATCGGCTTGAACGTTGCAATTAAGAAAGCCAACGAGAAATCCAAGTCCAATGCAGAAACTGTGCAAGAAAGTAACAGCAGTGTTGC
TTTCGGAATGTCGGAAGCAGTCATTACTCCTTGCTTGAGCTCTGGCTTTCTAACTGGATTGAAGTACAAGGATCATTCTTTCTTGGCCTCCCTCTCACAA
GCTTGA
AA sequence
>Lus10016201 pacid=23142650 polypeptide=Lus10016201 locus=Lus10016201.g ID=Lus10016201.BGIv1.0 annot-version=v1.0
MAKVAPPAPGPLNVGSMAKRKTPSELRGEQLRRTSLAELFGDSQSQSSNEGENGFKKPDAFRNRKYTDTRLDELYPAKKSRLRMPNVKDNLKEKQSTEQP
TNHSTLASLAAKRLKISCLDKFADSVDVSRDGSAKAHQTGEKCSQSIFRSVTELSSFGDQSLGLAAVDMDKALKGLTASCEPLRNSSFNADSSGQPAHYF
ENFRSECSIPGKKPPLDFTLKTKMRLMCACAVSGLHRTLMSSTCNSSPQFVFQQGSAEYSSSSSQTPGSQICSPKSLHSWVYPQSTLPPAVISVLASSAA
EGDFLKKRHLAWEESFRSLYYLLRKNICNIFYVSTSHFVVMFTSENGSGSPKSFCNAYISQSTRSLRSLLREHDVCFSMPLCHSKMEEVATEHLVELSEI
ARQNLGQTRQPSSSFNDVDNTTQSLLAFNGKKDVQGLYDFLLNYRSFLTLLSGIDVPVLYSPVPFTNAGLSAPEIRCVDMKKPDHTTTSQKDASSDSLSS
IIEIKGTCIPPWIISRICAIMSSEATSYEASFATEPRSIGLNVAIKKANEKSKSNAETVQESNSSVAFGMSEAVITPCLSSGFLTGLKYKDHSFLASLSQ
A

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G54750 unknown protein Lus10016201
[exp]
0 1
AT1G53140 DRP5A Dynamin related protein 5A (.1... Lus10002141
[exp]
2.0 0.9439
AT4G32730 MYB ATMYB3R-1, PC-M... C-MYB-LIKE TRANSCRIPTION FACTO... Lus10011687
[exp]
2.0 0.9482
AT1G01110 IQD18 IQ-domain 18 (.1.2) Lus10012608
[exp]
4.5 0.9269
AT5G63920 TOP3A, AtTOP3al... topoisomerase 3alpha (.1) Lus10004959
[exp]
9.0 0.9290
AT5G67270 ATEB1C, ATEB1H1 ATEB1-HOMOLOG1, MICROTUBULE EN... Lus10019316
[exp]
9.3 0.9396
AT3G54650 FBL17 RNI-like superfamily protein (... Lus10024855
[exp]
10.4 0.9204
AT5G55830 Concanavalin A-like lectin pro... Lus10016620
[exp]
11.0 0.9376
AT2G36010 E2F_DP ATE2FA, E2F3 E2F transcription factor 3 (.1... Lus10016972
[exp]
11.1 0.8912
AT3G53320 unknown protein Lus10019909
[exp]
11.4 0.8676
AT3G22780 CPP ATTSO1, TSO1 CHINESE FOR 'UGLY', Tesmin/TSO... Lus10002033
[exp]
13.6 0.9334

Lus10016201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.