Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06550 706 / 0 unknown protein AT1G78280 254 / 4e-72 transferases, transferring glycosyl groups (.1) AT5G06540 169 / 4e-44 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G61170 154 / 1e-38 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 146 / 2e-36 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33170 144 / 3e-35 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G68930 142 / 5e-35 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G48910 141 / 1e-34 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G40405 140 / 2e-34 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37170 134 / 2e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029343 [exp] 912 / 0 AT5G06550 730 / 0.0 unknown protein Lus10029344 [exp] 279 / 2e-83 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010350 [exp] 260 / 9e-74 AT1G78280 1211 / 0.0 transferases, transferring glycosyl groups (.1) Lus10036482 [exp] 258 / 4e-73 AT1G78280 1194 / 0.0 transferases, transferring glycosyl groups (.1) Lus10040634 [exp] 157 / 3e-40 AT4G14050 705 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026006 [exp] 139 / 6e-34 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040577 [exp] 134 / 6e-34 AT1G25360 577 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014298 [exp] 137 / 3e-33 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035164 [exp] 135 / 2e-32 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G065400 [exp] 741 / 0 AT5G06550 711 / 0.0 unknown protein Potri.002G099400 [exp] 249 / 5e-70 AT1G78280 1234 / 0.0 transferases, transferring glycosyl groups (.1) Potri.016G065500 [exp] 217 / 9e-61 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G321700 [exp] 157 / 6e-40 AT4G14050 808 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G071800 [exp] 152 / 4e-38 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G005400 [exp] 145 / 6e-36 AT1G56690 1018 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G047600 [exp] 142 / 1e-34 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G031600 [exp] 139 / 9e-34 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G369900 [exp] 138 / 9e-34 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G011000 [exp] 139 / 1e-33 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF02373 [flax] [poplar] JmjC JmjC domain, hydroxylase CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10016202 pacid=23142667 polypeptide=Lus10016202 locus=Lus10016202.g ID=Lus10016202.BGIv1.0 annot-version=v1.0 ATGCTGAGCTGCAGAAGCACACTGTTCTCCCTTGCCATAAGAAAAAACAACAACAAGAAGACGAAGACGAAGAAGAACAACAACAGAAAGACCAAATCCA GAAGAACACCCGCCATTTCCAACAACCGCCGACAAGAAGAAAAAGCGCCACCTGAAGAAGATGAAGCAGAAGAAGAAGGGTTTAACTTCAACCTCAAGGG TTCAGCTCCGTCACACGCTCACGGCGTCCAGCCACTCGGAAACCTCTACTTCAACCCGGGCGCCGTCAATTCACGGAACACCGGTTTAGGTAATCTACAA TTTTTATCAGACGAGCTGGTTCTCGACATATTAGGGTTTCTCAATGCTACTCACCTGGGAAATTTAGCCGCCGTGAGTAAATCCTTTTATGTATACGCCA ATCATGAGCCGCTTTGGAGAAATCTTGTCCTGGGCGAGCTGAAAGGCGGCTTCTTTTTCAATGGATCATGGAGATCTGCTTACATTGCTGCTCGTTATGA AAATGTTGATAACTATAATCTAGGGTTTTCGAAATTGAAGGTTAGGGATTTCTACTCGGACTATCTGTTCCAGAGTTGGCTGTGTGCTAATCTGGAGATG AAACCTGAGTGGCTTGAGAGGGATAACATAGTTAGGAAGAGAGGGATTAGTGTCGAGGAATTCGTGTCAAATTTTGAGGAACCGAATAAGCCGGTGTTGC TTGAAGGGTGCATTGATGGCTGGCCTGCTTTGCAGAAATGGATTGATAGGGATTACCTGATTAGGAAATGTGGAGATGTGAGGTTTTCGGTTGGCCCGGT GCAGATGAAGCTTGATGAGTACTTTAATTACTCGGATCGAGTTAAGGAAGAGAACTTTAATTACTCGGATCGAGTTAAGGAAGAGAGGCCATTGTATCTG TTCGATCCGAAGTTCGCTGAGAAGGTTCCGGTGCTGGATTTGGATTACGAGGTTCCGGCTTACTTTCGGGAGGATTTGTTCAGCGTTTTGGGGAAGGAGA GGCCGGATTATCGGTGGATTATACTGGGTCCTGAAGGGTCTGGTTCTTCGTTCCACATTGATCCTAATTCGACTTCAGCGTGGAATGCGGTGATTAAGGG TTCTAAGAAGTGGATTTTGTTCCCTCCCGATGTGGTACCGCCTGGTGTGCATCCTAGCCCGGATGGGGCAGAGGTGGCTTGTCCGGTTTCTATAATCGAA TGGTTCATGAACTTTTATGGCGCTACGAAGAATTGGCAGAAGAGACCTGTTGAGTGTATCTGTAGAGCCGGGGAAGTGATTTTCGTACCGAATGGATGGT GGCATCTGGTGATCAACCTGGAAGAATCCATTGCCATTACTCAGAACTATGTCAGCAGGAGGAACTTGCTGAACGTTATAGATTTCCTAAAGAGGCCGAA CGCGAGTGAACTCGTGTCGGGAACTCGAGACAGGGTGAACCTACACGACAAGTTCAGGAACGCCGTGGAGGCGCATCTGCCTCCGGGGACTATCGATCGA TTGATGGAGAAAGCGTCGGAGAAGAAGAAGGCTGAACAGAAGAAAGTTTCATTCTGGGATTCTGTCTTAGATTCTCAAGCTGGTGGCTTCAAGGGATTCT CCACCAGCCGTGACCCGTCTCAGTCCTTCTGTTTCTACCTCCATTCTCGCCGTGCCGGAATCCTCCCCGATAATCTCACTTATCCGTTCCTCGTCAAGTC CTGTGCAGAATTCGTCTCGTTGGAGATGGGAGCTCAAGCTCATGGTGAAATCGTCGTCCATGGATTCGAAAACGATCTGTTCGTCCAGAATTCGCTCGTC AACATGTACTCTCATTTTGGAGAAATCGTTTCCGCGAGGCGTGTATTTAACAGGATTCTGAATCTGGATGTTGTTTCGTGGACGTCAATGATCGCCGGCA CGATGATTAGCGGTTACGTTAAGAACAGTTTCGTCAAGGAGGCGATTGAGATGTTTAGGATTCTTCAATCACGAGGAATTCGAGCTAATGAGACGGTAAT GGCGAGTGTGGTTGCGTCCTGTGCTCATTTAGGCGCTCTGGAAATCGGAGAGAAAGCTCATGAGTATATAGAAATGAGGATGGCGATGAAGGAAAAGGGA GTGAAGAAGACACCGGGGTATAGCTTGATCGAGATGGACGGTGAGGTTCATCGGTTTACCTTGGGCGACAAGTCACACCCGGAAATCGACCAGATTGAGA GATCGTGGGAAGAGATAGTGAAGAGGATAAGGAATGAAGGGTATTTAGGGAACACTGATGATGCATTGTTTGATGTTGAGCAAGAGGAGAAGGAAACTGC AATTTTTCGTCATAGTGAGAAGCTTGCAACTGCGTACGGGATCATGAAGAGTAAGGGTGGAAGTAAGCCTATTAGGATAGTGAAGAACTTGAAGGTTTGT GAAGACTGCCACACTGCTAGTAAGTTGATATCTTAA
AA sequence Show only first row Show all	>Lus10016202 pacid=23142667 polypeptide=Lus10016202 locus=Lus10016202.g ID=Lus10016202.BGIv1.0 annot-version=v1.0 MLSCRSTLFSLAIRKNNNKKTKTKKNNNRKTKSRRTPAISNNRRQEEKAPPEEDEAEEEGFNFNLKGSAPSHAHGVQPLGNLYFNPGAVNSRNTGLGNLQ FLSDELVLDILGFLNATHLGNLAAVSKSFYVYANHEPLWRNLVLGELKGGFFFNGSWRSAYIAARYENVDNYNLGFSKLKVRDFYSDYLFQSWLCANLEM KPEWLERDNIVRKRGISVEEFVSNFEEPNKPVLLEGCIDGWPALQKWIDRDYLIRKCGDVRFSVGPVQMKLDEYFNYSDRVKEENFNYSDRVKEERPLYL FDPKFAEKVPVLDLDYEVPAYFREDLFSVLGKERPDYRWIILGPEGSGSSFHIDPNSTSAWNAVIKGSKKWILFPPDVVPPGVHPSPDGAEVACPVSIIE WFMNFYGATKNWQKRPVECICRAGEVIFVPNGWWHLVINLEESIAITQNYVSRRNLLNVIDFLKRPNASELVSGTRDRVNLHDKFRNAVEAHLPPGTIDR LMEKASEKKKAEQKKVSFWDSVLDSQAGGFKGFSTSRDPSQSFCFYLHSRRAGILPDNLTYPFLVKSCAEFVSLEMGAQAHGEIVVHGFENDLFVQNSLV NMYSHFGEIVSARRVFNRILNLDVVSWTSMIAGTMISGYVKNSFVKEAIEMFRILQSRGIRANETVMASVVASCAHLGALEIGEKAHEYIEMRMAMKEKG VKKTPGYSLIEMDGEVHRFTLGDKSHPEIDQIERSWEEIVKRIRNEGYLGNTDDALFDVEQEEKETAIFRHSEKLATAYGIMKSKGGSKPIRIVKNLKVC EDCHTASKLIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06550			unknown protein		Lus10016202 [exp]	0	1
AT3G11250			Ribosomal protein L10 family p...		Lus10014841 [exp]	6.9	0.8724
AT4G23620			Ribosomal protein L25/Gln-tRNA...		Lus10011005 [exp]	8.5	0.8568
AT4G36130			Ribosomal protein L2 family (....		Lus10028468 [exp]	11.1	0.8586
AT2G37060	CCAAT	NF-YB8	"nuclear factor Y, subunit B8"...		Lus10023167 [exp]	12.6	0.7870
AT4G11630			Ribosomal protein L19 family p...		Lus10017958 [exp]	13.5	0.8471
AT1G43170		RPL3A, ARP1, EM...	embryo defective 2207, ribosom...		Lus10006181 [exp]	15.3	0.8277
AT3G11250			Ribosomal protein L10 family p...		Lus10009887 [exp]	16.2	0.8550
AT1G16870			mitochondrial 28S ribosomal pr...		Lus10007056 [exp]	16.4	0.8496
AT2G45440		DHDPS2	dihydrodipicolinate synthase (...		Lus10015861 [exp]	18.3	0.8340
AT3G49080			Ribosomal protein S5 domain 2-...		Lus10014970 [exp]	21.2	0.8398

Compare expression of checked genes

Lus10016202 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.