Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06560 412 / 2e-139 Protein of unknown function, DUF593 (.1) AT3G11850 355 / 3e-117 Protein of unknown function, DUF593 (.1.2) AT3G54740 258 / 9e-81 Protein of unknown function, DUF593 (.1.2) AT5G57830 77 / 7e-15 Protein of unknown function, DUF593 (.1) AT5G16720 69 / 4e-12 Protein of unknown function, DUF593 (.1) AT2G24140 64 / 3e-11 Protein of unknown function, DUF593 (.1) AT4G30830 64 / 6e-11 Protein of unknown function, DUF593 (.1) AT4G13630 57 / 2e-08 Protein of unknown function, DUF593 (.1.2) AT1G04890 56 / 4e-08 Protein of unknown function, DUF593 (.1) AT4G13160 55 / 5e-08 Protein of unknown function, DUF593 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029342 [exp] 885 / 0 AT5G06560 473 / 4e-163 Protein of unknown function, DUF593 (.1) Lus10012288 [exp] 530 / 0 AT5G06560 464 / 2e-160 Protein of unknown function, DUF593 (.1) Lus10015990 [exp] 525 / 0 AT5G06560 467 / 8e-162 Protein of unknown function, DUF593 (.1) Lus10036599 [exp] 89 / 1e-18 AT4G30830 179 / 2e-52 Protein of unknown function, DUF593 (.1) Lus10035817 [exp] 77 / 5e-15 AT4G30830 175 / 4e-51 Protein of unknown function, DUF593 (.1) Lus10010774 [exp] 77 / 8e-15 AT5G57830 145 / 8e-40 Protein of unknown function, DUF593 (.1) Lus10022171 [exp] 76 / 1e-14 AT5G57830 141 / 3e-38 Protein of unknown function, DUF593 (.1) Lus10016673 [exp] 65 / 7e-11 AT4G13630 237 / 6e-70 Protein of unknown function, DUF593 (.1.2) Lus10004050 [exp] 64 / 2e-10 AT5G16720 290 / 7e-87 Protein of unknown function, DUF593 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G065200 [exp] 498 / 6e-173 AT5G06560 517 / 4e-180 Protein of unknown function, DUF593 (.1) Potri.006G199000 [exp] 471 / 2e-162 AT5G06560 523 / 0.0 Protein of unknown function, DUF593 (.1) Potri.006G181300 [exp] 89 / 1e-18 AT5G57830 162 / 3e-45 Protein of unknown function, DUF593 (.1) Potri.018G103500 [exp] 88 / 2e-18 AT5G57830 169 / 5e-48 Protein of unknown function, DUF593 (.1) Potri.012G073400 [exp] 61 / 1e-09 AT1G74830 390 / 2e-129 Protein of unknown function, DUF593 (.1) Potri.002G242900 [exp] 55 / 8e-08 AT4G13630 187 / 3e-51 Protein of unknown function, DUF593 (.1.2) Potri.017G055100 [exp] 54 / 3e-07 AT4G13630 211 / 2e-59 Protein of unknown function, DUF593 (.1.2) Potri.005G220600 [exp] 51 / 2e-06 AT1G08800 159 / 1e-39 Protein of unknown function, DUF593 (.1.2) Potri.015G068400 [exp] 50 / 3e-06 AT1G74830 340 / 1e-111 Protein of unknown function, DUF593 (.1) Potri.017G129200 [exp] 49 / 6e-06 AT5G16720 286 / 2e-84 Protein of unknown function, DUF593 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04576 [flax] [poplar] Zein-binding Zein-binding
Representative CDS sequence Show only first row Show all	>Lus10016203 pacid=23142721 polypeptide=Lus10016203 locus=Lus10016203.g ID=Lus10016203.BGIv1.0 annot-version=v1.0 ATGGATTTGGAATTAGCTGCACCATTTGCTCAATCACCTAGGGATTGGGGGAGATGCTGCAGTTGTGGATGTGGTAGGTGTTCTTCCAGGGCTTCATGGA CTCGATCTGTGAAGAGGAAATACGACGAATTCGAAGGGGGAAAGCCATTCATTATACCAGGGCTTGATGCGGGGGTATCGAATCCACGCGTGCAAATTGA GAACGAAATTATCGCCCTGCGAGAGACGGTGAGCAGCCAGCAGCAGGCGATACATGACTTGTACACAGAGCTGGAAGAGGAGAGGAATGCTGCCTCGTCA GCTGCCAGCGAGGCGATGTCGATGATCCTGAGGCTGCAGAGGGAGAAAGCCGAGGTGCAAATGGAAGCTAGGCAGTTCAAGCGTTTCGCTGAGGAGAAGA TGGCCCACGATCAAGAAGAGATGGTTTCGTTAGAGGACGTGGTTTACAAGAGGGATCAGGTGATTCAGTCTCTTACTTGCGAAGCACAGGCGTACAAGCA TAGAATGATGAGTGTCGGGCTTACAGAGTCTGAGGTCGAAGGCGGTTTCAGTATTAATCAGAGCTTGTCCGATACTGAGTTCCCAGATTACGATTATCCA CCGTTGAAATGCAATGTGAATGAGAATCAGCCTCCAATGGAGGCTGATTGTGATGAAGAACAAGCACAAGAAGTTGTGGATGTTGAGAAGTACGCATTTG GCGAAACACCTCGATATGGTGAGACTCAGACTCCTCGAGGTAAGGATCATTTGAAGAATCTGGAGTATAGAATCTACCAGATGGAGAGGGGACCTAGCGA TGTTTCGACCGGGAAGCAGATTCTGGAGAAGGTGATAGTCGGGCATTCACCTAGGAAGACTAGACACAGCAGGATCTTATCTGTGGAGAGCTCGGGTTCA TTCAAAGGTGCTCCTCCTGATTCGCCTTGCTACAAGTTTCCGAATAGCTTTAAGAAGGCGGATTATGTCACGCACCCTGTGGAACAACATAAGTATCCTA GAAAAGCGGATAATGTCTCGGAGTTTGATGAGATGGATGATCGAGTTTACACCATTGACTCTGTACACAATGGTGTAACGGATCATAAAACTGCTGGTGA TGATTATGTTTCGTCTCCTTTTAGGGATGAGTTTGATCAGCCTGACCTTAGCGATCCGGATATTAAGACACTATATTCAAGGCTTCATGCACTGGAGGCT GATAGGGAATCGATGAGGCAGGCTATTATCTCGATGCGTACCGATAAAGCGCAGCTGGTACTGCTCAAGGAAATCGCGCAGCAGTTGTGCAAGGATGATA CACCGGAGCGTAGATCACCTATGAAGAAGCCTTCCGTTGCTGGAAGCTGGAAGCTCGCATCGGTTCTCAAGTGTGTCACATCCTTTGCTTTCTGGAGGAA GAGAGCTCGCGAGAGGCGGTTCGGGCCTGGAACTGATGATGCTGGGTTGCTGATGCTTCTGGACGAAGGATCTCGAGCAAGGCAGCATTGGAGATTACTG TCAAGAACCCACCTATAA
AA sequence Show only first row Show all	>Lus10016203 pacid=23142721 polypeptide=Lus10016203 locus=Lus10016203.g ID=Lus10016203.BGIv1.0 annot-version=v1.0 MDLELAAPFAQSPRDWGRCCSCGCGRCSSRASWTRSVKRKYDEFEGGKPFIIPGLDAGVSNPRVQIENEIIALRETVSSQQQAIHDLYTELEEERNAASS AASEAMSMILRLQREKAEVQMEARQFKRFAEEKMAHDQEEMVSLEDVVYKRDQVIQSLTCEAQAYKHRMMSVGLTESEVEGGFSINQSLSDTEFPDYDYP PLKCNVNENQPPMEADCDEEQAQEVVDVEKYAFGETPRYGETQTPRGKDHLKNLEYRIYQMERGPSDVSTGKQILEKVIVGHSPRKTRHSRILSVESSGS FKGAPPDSPCYKFPNSFKKADYVTHPVEQHKYPRKADNVSEFDEMDDRVYTIDSVHNGVTDHKTAGDDYVSSPFRDEFDQPDLSDPDIKTLYSRLHALEA DRESMRQAIISMRTDKAQLVLLKEIAQQLCKDDTPERRSPMKKPSVAGSWKLASVLKCVTSFAFWRKRARERRFGPGTDDAGLLMLLDEGSRARQHWRLL SRTHL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06560			Protein of unknown function, D...		Lus10016203 [exp]	0	1
AT5G45760			Transducin/WD40 repeat-like su...		Lus10029246 [exp]	5.3	0.9252
AT1G18270			ketose-bisphosphate aldolase c...		Lus10002140 [exp]	6.0	0.9373
AT1G69060			Chaperone DnaJ-domain superfam...		Lus10019189 [exp]	8.1	0.9281
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10006009 [exp]	9.4	0.9355
AT5G49360		ATBXL1, BXL1	beta-xylosidase 1 (.1)		Lus10016858 [exp]	10.8	0.9374
AT1G63670			Protein of unknown function (D...		Lus10002008 [exp]	12.0	0.9003
AT4G34030		MCCB	3-methylcrotonyl-CoA carboxyla...		Lus10019848 [exp]	13.9	0.9366
AT1G36990			unknown protein		Lus10028037 [exp]	19.9	0.8995
AT3G30390			Transmembrane amino acid trans...		Lus10036845 [exp]	23.5	0.9309
AT5G17240		SDG40	SET domain group 40 (.1)		Lus10035757 [exp]	29.0	0.9033

Compare expression of checked genes

Lus10016203 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.