Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06570 219 / 8e-70 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G16080 108 / 4e-27 ATCXE17 carboxyesterase 17 (.1) AT5G62180 107 / 8e-27 ATCXE20 carboxyesterase 20 (.1) AT3G63010 103 / 3e-25 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) AT5G27320 96 / 9e-23 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT3G05120 96 / 1e-22 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1) AT1G47480 92 / 3e-21 alpha/beta-Hydrolases superfamily protein (.1) AT2G45600 90 / 1e-20 alpha/beta-Hydrolases superfamily protein (.1) AT1G68620 89 / 6e-20 alpha/beta-Hydrolases superfamily protein (.1) AT5G23530 83 / 5e-18 ATCXE18 carboxyesterase 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029341 [exp] 329 / 7e-113 AT5G06570 293 / 5e-98 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10015988 [exp] 261 / 3e-86 AT5G06570 346 / 5e-119 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10015989 [exp] 255 / 8e-84 AT5G06570 337 / 1e-115 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10036168 [exp] 215 / 2e-68 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10008439 [exp] 191 / 4e-59 AT5G06570 281 / 8e-94 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10013377 [exp] 194 / 6e-56 AT3G44050 1290 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013376 [exp] 180 / 8e-55 AT5G06570 256 / 3e-84 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10024087 [exp] 108 / 2e-27 AT5G16080 187 / 1e-56 carboxyesterase 17 (.1) Lus10013774 [exp] 106 / 2e-26 AT5G23530 315 / 2e-106 carboxyesterase 18 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G198800 [exp] 280 / 1e-93 AT5G06570 373 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.016G065000 [exp] 279 / 2e-93 AT5G06570 376 / 7e-131 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G155800 [exp] 214 / 8e-68 AT5G06570 310 / 4e-105 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G127600 [exp] 117 / 1e-30 AT5G16080 346 / 2e-118 carboxyesterase 17 (.1) Potri.001G032400 [exp] 115 / 7e-30 AT1G68620 185 / 9e-56 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G192650 [exp] 115 / 7e-30 AT5G16080 182 / 1e-54 carboxyesterase 17 (.1) Potri.003G192600 [exp] 111 / 2e-28 AT1G68620 173 / 2e-51 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G031500 [exp] 111 / 2e-28 AT1G68620 159 / 5e-46 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G118400 [exp] 110 / 9e-28 AT1G68620 345 / 4e-118 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G113700 [exp] 107 / 6e-27 AT5G16080 358 / 3e-123 carboxyesterase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10016204 pacid=23142711 polypeptide=Lus10016204 locus=Lus10016204.g ID=Lus10016204.BGIv1.0 annot-version=v1.0 ATGATAAGGATTTGTGGAAGATTGCATGGGAGTTCTCCAACTCTTCAACGACGGCACCCATTCCCCCCTCTTCCGCCGTCGCCGGTAAACGGAATCTCCG CCGCCTCCCCGTCCTCTTCTACTTCCACGGCGGCGGATTCTGCCTCGGTTCTCGCGACTGGCCAAACTTCCACAACAGCTGCCAGCGCCTCTCCTCGGCC CTGGACGCCCTGGTCGTGGCTGGACGCTCTGGTCGGTGCTCCGGACTCCCGGCTGGCACCCGAACATAGGCTTCCGGCGGCAGTGGACGACGGCGTCGCT GCCTTGAAGTGGCTGAAGTTGAGTGATGATGATTGGTTGACTGGTGGGGGAGTTGACTTTGACCGGGTTTTTGTGCTGGGTGACTCGTCCGGGGGAAATA TTGCTCACCATTTGGCGGTTCGGCTTGGGGCTGGTTCGACCGGTTTGGATCCGGTTCGAGTCAGGGGTTATATTTTGATGGCGCCGTTTTTCGGCGGGGT TGAACGGACCGAGTCAGAGGAAGGGCCAAGTGAGGAGTTGCTCACCTTAGAGGCTCTTGACAGGTTTTGGAGACTATCTTTGCCGCAGGGAGAAACCAGA GACCATCCAATGGCAAATCCATTCGGACCGGCTAGCGTGAACCTAGATAAGGTGGAGACCGACCCGATTTTGGTGATCGCTGGCGAGTGCGAGCTGTTGA GGGATAGAGGCCGCGACTATGCTACGAGGCTCAAAGAGATGGGGAAGAAAGTCGAGTACTTCGAGATCAAAGGCAAGCAACATGGTTCGTTCACTAACGA CCCTTACTCGGAGACTTCCCACGATATCATCAACGTCCTCAACCGGTTCATCCTCGAAAACTCTGGTTGA
AA sequence Show only first row Show all	>Lus10016204 pacid=23142711 polypeptide=Lus10016204 locus=Lus10016204.g ID=Lus10016204.BGIv1.0 annot-version=v1.0 MIRICGRLHGSSPTLQRRHPFPPLPPSPVNGISAASPSSSTSTAADSASVLATGQTSTTAASASPRPWTPWSWLDALVGAPDSRLAPEHRLPAAVDDGVA ALKWLKLSDDDWLTGGGVDFDRVFVLGDSSGGNIAHHLAVRLGAGSTGLDPVRVRGYILMAPFFGGVERTESEEGPSEELLTLEALDRFWRLSLPQGETR DHPMANPFGPASVNLDKVETDPILVIAGECELLRDRGRDYATRLKEMGKKVEYFEIKGKQHGSFTNDPYSETSHDIINVLNRFILENSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10016204 [exp]	0	1
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10002356 [exp]	2.2	0.9393
AT5G14890			NHL domain-containing protein ...		Lus10032160 [exp]	3.5	0.9404
AT3G50120			Plant protein of unknown funct...		Lus10004515 [exp]	4.0	0.9469
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10008291 [exp]	4.9	0.9472
AT2G29350		SAG13	senescence-associated gene 13 ...		Lus10024358 [exp]	5.7	0.9330
AT5G45690			Protein of unknown function (D...		Lus10005416 [exp]	8.8	0.9387
AT3G01430			unknown protein		Lus10014527 [exp]	13.4	0.9447
					Lus10031880 [exp]	14.0	0.9159
AT3G16350	MYB		Homeodomain-like superfamily p...		Lus10006826 [exp]	17.0	0.9276
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10017934 [exp]	20.2	0.9337

Compare expression of checked genes

Lus10016204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.