Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56880 57 / 2e-09 VQ motif-containing protein (.1) AT2G41010 53 / 3e-08 ATCAMBP25 calmodulin (CAM)-binding protein of 25 kDa (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029339 [exp] 253 / 2e-83 AT2G41010 101 / 4e-25 calmodulin (CAM)-binding protein of 25 kDa (.1) Lus10012292 [exp] 113 / 1e-30 AT3G56880 125 / 1e-35 VQ motif-containing protein (.1) Lus10015982 [exp] 113 / 3e-30 AT3G56880 135 / 5e-39 VQ motif-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G032300 [exp] 82 / 2e-18 AT3G56880 127 / 1e-35 VQ motif-containing protein (.1) Potri.016G029600 [exp] 82 / 2e-18 AT3G56880 125 / 4e-35 VQ motif-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [flax] [poplar] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Lus10016205 pacid=23142656 polypeptide=Lus10016205 locus=Lus10016205.g ID=Lus10016205.BGIv1.0 annot-version=v1.0 ATGGGTTCTTCATTCGACGCCTGGAAATTCCGTCCGGCGTTTCCCAACTCGTGGATCTCCGAAACCCACGCCCAAGAATCCGAAGCTTTGACCAAAGCCC TCCAGCAATCATTTTTTTCTACCTCCGATCACAATGCATTCAGTCCGTTCCCTTCTTCCGATTTCGATTTCGATTTCGCTGCACTGATCGGCAATCCGGA TACTCCGGCTACAATTCCTTCCTCTTCCGACCCGGATTCAACCCCCAACCCCACTCCAAAGCTCCGTAACGGAAACAACGCCGTTGTTCCTGGCGCTACC GGGAAGGTCACCAAGCGGAAGAAGAAGCCACGTGCCGCCTCTAAGAAGTCGCAGACCACCTTCATCGTTGCAGATCCGGCCAACTTCCGGAAGATGGTCC AACAGGTCACCGGCGGCATATCCGTTGTCCCCGCTCCGAAGCCGGAGCAGCAGAGGTTCGGCGGCGGTGGGAGGACGAATTACTTGTTCCACCAGGCGGC GGCTGAGGAGCTGGCAGCAGGAGGAGGCGCGTGCCTGCCAACGCTCGACACTTCGGCTTTTTTTCTGGACCATATTAATCAGAATCCAACCCATCAGCGG GATTCACGACAGAAGGCTACAGTCTCCTTCACGACTGGCGGCGGAGACGCGGTAGGTCCGCTATCATTTCCACACGCGCCGGTGGGTGGTGGTGGGGTAG ATTTCGACAGTTTTTCGAGTTTTCCAACTCTCGAGTCCTGGAAAGTTGTTTAG
AA sequence Show only first row Show all	>Lus10016205 pacid=23142656 polypeptide=Lus10016205 locus=Lus10016205.g ID=Lus10016205.BGIv1.0 annot-version=v1.0 MGSSFDAWKFRPAFPNSWISETHAQESEALTKALQQSFFSTSDHNAFSPFPSSDFDFDFAALIGNPDTPATIPSSSDPDSTPNPTPKLRNGNNAVVPGAT GKVTKRKKKPRAASKKSQTTFIVADPANFRKMVQQVTGGISVVPAPKPEQQRFGGGGRTNYLFHQAAAEELAAGGGACLPTLDTSAFFLDHINQNPTHQR DSRQKATVSFTTGGGDAVGPLSFPHAPVGGGGVDFDSFSSFPTLESWKVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41010		ATCAMBP25	calmodulin (CAM)-binding prote...		Lus10016205 [exp]	0	1
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Lus10035366 [exp]	2.0	0.9227
AT5G10930		CIPK5, SnRK3.24	SNF1-RELATED PROTEIN KINASE 3....		Lus10024075 [exp]	3.5	0.8992
AT2G41010		ATCAMBP25	calmodulin (CAM)-binding prote...		Lus10029339 [exp]	7.5	0.9104
AT4G00300			fringe-related protein (.1.2)		Lus10005120 [exp]	9.6	0.8994
					Lus10043392 [exp]	10.7	0.8989
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Lus10016801 [exp]	12.5	0.8668
AT4G17880	bHLH	bHLH004, MYC4	Basic helix-loop-helix (bHLH) ...		Lus10000037 [exp]	13.3	0.8617
AT5G17820			Peroxidase superfamily protein...		Lus10005681 [exp]	13.6	0.8388
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Lus10022497 [exp]	14.3	0.8610
AT5G46760	bHLH	bHLH005, ATR2, ...	Basic helix-loop-helix (bHLH) ...		Lus10035365 [exp]	15.2	0.8551

Compare expression of checked genes

Lus10016205 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.