Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58560 865 / 0 DNAse I-like superfamily protein (.1) AT3G58580 844 / 0 DNAse I-like superfamily protein (.1) AT3G18500 133 / 2e-33 DNAse I-like superfamily protein (.1.2.3) AT1G31500 112 / 9e-27 DNAse I-like superfamily protein (.1.2.3.4) AT5G11350 114 / 2e-26 DNAse I-like superfamily protein (.1) AT1G73875 102 / 8e-23 DNAse I-like superfamily protein (.1) AT1G31530 49 / 3e-06 DNAse I-like superfamily protein (.1) AT5G54130 49 / 5e-06 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) AT1G02270 49 / 7e-06 Calcium-binding endonuclease/exonuclease/phosphatase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029338 [exp] 1066 / 0 AT3G58560 945 / 0.0 DNAse I-like superfamily protein (.1) Lus10012293 [exp] 978 / 0 AT3G58560 949 / 0.0 DNAse I-like superfamily protein (.1) Lus10015981 [exp] 890 / 0 AT3G58580 872 / 0.0 DNAse I-like superfamily protein (.1) Lus10036357 [exp] 122 / 2e-29 AT3G18500 422 / 2e-145 DNAse I-like superfamily protein (.1.2.3) Lus10014775 [exp] 118 / 3e-28 AT3G18500 423 / 7e-146 DNAse I-like superfamily protein (.1.2.3) Lus10026203 [exp] 107 / 3e-25 AT1G31500 458 / 2e-162 DNAse I-like superfamily protein (.1.2.3.4) Lus10013119 [exp] 107 / 4e-24 AT5G11350 536 / 0.0 DNAse I-like superfamily protein (.1) Lus10008086 [exp] 103 / 9e-23 AT5G11350 526 / 9e-178 DNAse I-like superfamily protein (.1) Lus10032490 [exp] 100 / 5e-22 AT1G73875 446 / 3e-154 DNAse I-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G061700 [exp] 960 / 0 AT3G58560 926 / 0.0 DNAse I-like superfamily protein (.1) Potri.006G195600 [exp] 957 / 0 AT3G58560 904 / 0.0 DNAse I-like superfamily protein (.1) Potri.003G106000 [exp] 105 / 2e-24 AT1G31500 457 / 1e-160 DNAse I-like superfamily protein (.1.2.3.4) Potri.018G032300 [exp] 107 / 5e-24 AT5G11350 560 / 0.0 DNAse I-like superfamily protein (.1) Potri.012G057100 [exp] 105 / 6e-24 AT1G73875 502 / 2e-176 DNAse I-like superfamily protein (.1) Potri.014G108200 [exp] 52 / 7e-07 AT5G54130 620 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.015G004200 [exp] 50 / 2e-06 AT5G54130 719 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.012G007600 [exp] 49 / 5e-06 AT5G54130 721 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.002G182500 [exp] 47 / 3e-05 AT5G54130 600 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10016206 pacid=23142636 polypeptide=Lus10016206 locus=Lus10016206.g ID=Lus10016206.BGIv1.0 annot-version=v1.0 ATGCTGTGCGTGCTGCGTGTGCACCTTCCGTCGGATATCCCCATTGTAGGCTGCGAGTTAACTCCTTACGTCCTCTTACGGCGAGCTGACAAGTCTCTCG TCTCCGAAGATGTCCCTGAGTCTTCCCCTCTCGATGGCCATTTCTTGAGATATAAATGGTACCGTATACAAAGTGATAAGAAGGTAGCTGTATGTAGTAT ACATCCATCAGAACAAGCCACATTACAATGCATAGGCTGTGTCAAGGCAAAGATACCAGTCACTAAAAGTTACCATTGCTCTCCGAAATGCTTCTCTGAT GCGTGGCAGCACCACCGCGCTCTTCATGAACGTGCAGCGAGTGCTGTGAATGAGAATGGGAATGAGGAAGAAGAGCTTTTCGGGCGTCTCAATAGTGCAG GATCTGGTGTTAGTGGTTCAAGTTTAACTAGTTCTGCATCAACTGCAAGCTTGGCAAATGGATCAACTTCTTTGTATCCTGCAGCAGTAACGCGAGGTGG TGAGACCTGGTTTGAAGTCGGGCGGTCGAAAACATATACACCGTCGGCTGATGATATTGGTCATGTTCTTAAGTTCGAGTGTGTTGTGGTTGATGCTGAA ACCAAACAAACTGTGGGGCATCCCAACACGTTAACGACTTCCCGTGTTATTCCAGCCCCCTCCCCTCCCCCTCGGCGGTTGGTCCCTGTCAGTGGGGTTG ATGTCAATAGTCATTTAGATGCCGATGGTCGTATTTCATCATCTGGAACTTTCACTGTGCTCTCATATAACGTCTTGGCTGATGTCTATGCTACGAGTGA GTCTTACGCTTATTGCCCGTCATGGGCTCTGTCATGGGCCTATCGACGGCAGAACTTGCTGCGAGAAATAGTTGGATATCGGGCAGATATTGTTTGTCTC CAGGAGGTTCAAAATGATCATTTTCAGGAGTTCTTTGCTCCAGAGTTGGACAAACATGGTTACCAAGCCTTGTACAAGCGGAAGACAAATGAAGTGTACA ATGGAATTCCAAATATCATCGACGGTTGTGCAACTTTCTTTCGTAGAGATAGATTTTCACACGTAAAAAAATATGAGGTTGAATTCAACAAGGCTGCTCA GTCTTTGACGGAAGCTTTGGTTCCTAGTGCTCAGAGAAAAACAGCATTGAACCGATTGGTCAAGGATAATGTTGCACTAATTGTGGTATTGGAGGCGAAG TTCAGCAATCAAGGAGCTGATACGCCTGGGAAGCGGCAGCTTCTATGTGTTGCAAATACCCATGTAAATGTCCATCAAGACCTAAAGGATGTGAAGCTTT GGCAGGTTCTTACTCTTCTTAAGGGATTAGAGAAAATAGCTGCTAGCGCTGACATTCCTATGATAGTTTGTGGAGATTTCAACTCACTACCTGGAAGTGC TCCTCATGCACTTCTAGCAATGGGAAAGGTGGATCCTTTACATCCCGATATAGTTGTAGACCCTCTCAGTATATTGCGACCTCACAGCAAGCTAACACAT CAGCTACCACTGGTTAGTGCTTACTCATCGTTTGCGAGACTGGGAGTTGGTCTTGGTCAGCAGCAGAGGAGGAAACTTGATCCGGCTACGAACGAGCCAT TGTTTACAAACTGCACTAGGGATTTTATTGGCACTCTGGATTACATATTTTACACGGCCGACTCATTAACGGTAGAGGCCTTGTTGGAACTGTTGGATGA GGAAAGTCTGAGGAAAGACACAGCTCTTCCTTCTCCAGAGTGGTCATCCGATCATACTGCACTATTAGCCGAATTTCGTTGCAAGCCTAGACAAAGACGT TGA
AA sequence Show only first row Show all	>Lus10016206 pacid=23142636 polypeptide=Lus10016206 locus=Lus10016206.g ID=Lus10016206.BGIv1.0 annot-version=v1.0 MLCVLRVHLPSDIPIVGCELTPYVLLRRADKSLVSEDVPESSPLDGHFLRYKWYRIQSDKKVAVCSIHPSEQATLQCIGCVKAKIPVTKSYHCSPKCFSD AWQHHRALHERAASAVNENGNEEEELFGRLNSAGSGVSGSSLTSSASTASLANGSTSLYPAAVTRGGETWFEVGRSKTYTPSADDIGHVLKFECVVVDAE TKQTVGHPNTLTTSRVIPAPSPPPRRLVPVSGVDVNSHLDADGRISSSGTFTVLSYNVLADVYATSESYAYCPSWALSWAYRRQNLLREIVGYRADIVCL QEVQNDHFQEFFAPELDKHGYQALYKRKTNEVYNGIPNIIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTEALVPSAQRKTALNRLVKDNVALIVVLEAK FSNQGADTPGKRQLLCVANTHVNVHQDLKDVKLWQVLTLLKGLEKIAASADIPMIVCGDFNSLPGSAPHALLAMGKVDPLHPDIVVDPLSILRPHSKLTH QLPLVSAYSSFARLGVGLGQQQRRKLDPATNEPLFTNCTRDFIGTLDYIFYTADSLTVEALLELLDEESLRKDTALPSPEWSSDHTALLAEFRCKPRQRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58560			DNAse I-like superfamily prote...		Lus10016206 [exp]	0	1
AT1G72560		PSD	PAUSED, ARM repeat superfamily...		Lus10015655 [exp]	4.9	0.9302
AT5G35430			Tetratricopeptide repeat (TPR)...		Lus10039983 [exp]	5.0	0.9039
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10001415 [exp]	5.6	0.9407
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Lus10039707 [exp]	7.5	0.9353
AT4G13970			zinc ion binding (.1)		Lus10003970 [exp]	7.7	0.9162
AT3G55320		ABCB20, PGP20	ATP-binding cassette B20, P-gl...		Lus10040315 [exp]	8.4	0.9176
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10039457 [exp]	9.1	0.8950
AT3G54280		RGD3, ATBTAF1, ...	ROOT GROWTH DEFECTIVE 3, DNA b...		Lus10003868 [exp]	12.0	0.9350
AT5G11700			unknown protein		Lus10005497 [exp]	13.2	0.9015
AT4G00800		SETH5	transducin family protein / WD...		Lus10002679 [exp]	13.4	0.9255

Compare expression of checked genes

Lus10016206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.