Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42520 781 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58570 754 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58510 750 / 0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT5G63120 354 / 1e-114 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G55150 342 / 4e-111 DEA(D/H)-box RNA helicase family protein (.1) AT5G14610 340 / 1e-108 DEAD box RNA helicase family protein (.1.2) AT3G01540 338 / 3e-108 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT2G33730 328 / 6e-103 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G06480 328 / 5e-100 DEAD box RNA helicase family protein (.1) AT5G51280 308 / 5e-97 DEAD-box protein abstrakt, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015976 [exp] 873 / 0 AT2G42520 849 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10029337 [exp] 869 / 0 AT2G42520 728 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000849 [exp] 833 / 0 AT2G42520 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015977 [exp] 766 / 0 AT2G42520 738 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000848 [exp] 680 / 0 AT2G42520 655 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030075 [exp] 605 / 0 AT3G58570 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015978 [exp] 556 / 0 AT3G58570 535 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10001074 [exp] 537 / 0 AT3G58570 533 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015627 [exp] 339 / 1e-109 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G217800 [exp] 773 / 0 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G196000 [exp] 761 / 0 AT3G58570 790 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G007900 [exp] 758 / 0 AT2G42520 807 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G061900 [exp] 756 / 0 AT2G42520 786 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G083000 [exp] 346 / 3e-111 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G038300 [exp] 338 / 2e-109 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.012G084600 [exp] 341 / 3e-109 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G071400 [exp] 341 / 2e-107 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.001G347100 [exp] 336 / 2e-105 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.010G152400 [exp] 341 / 2e-104 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10016207 pacid=23142753 polypeptide=Lus10016207 locus=Lus10016207.g ID=Lus10016207.BGIv1.0 annot-version=v1.0 ATGACAACTAGATGGGCTGATTCTGTGGCTAACTCAGCTACTGACAATGCTGGTGGGCGTTCTGCACGCCCTGCCTATGTTCCACCCCACCTTCGCAATA AACCACCCTCGGCTGATGCTGCTGCTAAATCCACTGCGGCTCCGACTATTGACCGCCCTAGTTATGGTGGACCACCTGGTGGTTCCCGCTGGAATGGTGC TCCCAGAGCAGATACTGAGAGAACGGGACGTAATTATGGCGGTTGGAACAATAATACAGGAGGATGGGACCGTGGTAGAGGCCGTGAGGTGAACCCGTTT GGTGAAGAAGATGTGGAGTGTGAACCTAGCGGGCAGGAGAGCACTGGAATTAACTTTGATGCATATGAAGATATACCCGTGGAGGCAAGTGGGAGCAATA TACCTCCTCCTGTAAATACCTTTGCGGAGATAGACCTGGGCGAGGCAGTAAATCAGAACATACGAAGATGCAAGTATGTTAAGCCAACTCCGGTTCAGCG TAATGCAATCCCCATATTGATTGCAGGACGCGACTTGATGGCCTGTGCTCAGACAGGTTCAGGAAAGACTGCTGCGTTTTGCTTTCCTATAATTAGTGGG ATAATTCGAGACAATATGGTGCAGAGGCAACGTGCTCCAAGAACAGCATACCCGCTTGCTCTTATTCTTTCACCTACAAGAGAACTAGCTTCTCAGATAC ACGATGAAGCCAAGAAATTTGCTTACCAAAGTGGTGTAAGAGTCGTTGTTGCTTATGGTGGAGCTCCAATTCAACAACAGTTGCGAGAACTTGAAAGAGG AGTTGATATTCTTGTTGCCACTCCTGGACGATTGGTAGACTTGCTTGAGAGGGCCAGGGTGTCCTTGCAAATGATTAGATACTTGGCACTTGATGAGGCT GATAGGATGTTGGATATGGGGTTCGAGCCTCAGATCAGAAAGATTGTAGAACAAGTAGACATGCCCCCTTCTGGGATGAGACAGACAATGCTTTTCAGCG CCACTTTCCCAAAAGAAATACAGAGACTTGCATCGGACTTTCTCTCAAATTACATATTCTTGGCTGTGGGAAGGGTTGGGTCCAGCACTGATTTGATTCT TCAAAGGGTCGAATTTGTTCAAAATGCTGATAAGAGAAGCCATCTCATGGACCTTCTTCATGCACAAAAAGAAAGTGAAGTCAATGGCAAGGAATCGTTG ACATTAGTATTTGTTGAGACTAAGAAAGGAGCTGATTCTCTGGAGTACTGGTTGTGTGGCAACGGATTTCCTGCTACAACAATCCATGGCGATAGAACAC AGCAGGAACGAGAACTCGCACTGAGGTCATTCAAGAGCGGGAGGACGCCGATCCTAGTCGCAACGGACGTTGCAGCTCGCGGCCTCGACATACCCCACGT GGCGCACGTCATCAATTTCGACCTCCCCAACGACATCGACGACTACGTCCACCGAATCGGCCGTACCGGACGTGCCGGCAAGTCCGGTCTCGCCACGGCA TTCTTCAACGACAGCAACACCTCAATGGCTAGATCCCTCGTCGACCTGATGCAGGAGGCGAACCAAGAAGTTCCCGCCTGGCTTGTCCGGTATGCCTCTC GCTCTTCCTACGGCGGAGGCAAGAACCGGCGAGGAGGAGGTGGCGGCGGTGGAAGCCGGTTTGGTGCAAGGGACTTCAGAAGTGAAGGCGGCTCGTTCAG CCGCGGCGGTGGAGGAGGAGGAGGCGATTATTACGGGGGAGGTGGGAACAGCAACGGCGGTGCCGGAGGGGGGTATGGTGTCTCTGGAGGTGGTGGTTAT GGGATGGGTCCTGGAGTTACCAGCGCTTGGGATTAA
AA sequence Show only first row Show all	>Lus10016207 pacid=23142753 polypeptide=Lus10016207 locus=Lus10016207.g ID=Lus10016207.BGIv1.0 annot-version=v1.0 MTTRWADSVANSATDNAGGRSARPAYVPPHLRNKPPSADAAAKSTAAPTIDRPSYGGPPGGSRWNGAPRADTERTGRNYGGWNNNTGGWDRGRGREVNPF GEEDVECEPSGQESTGINFDAYEDIPVEASGSNIPPPVNTFAEIDLGEAVNQNIRRCKYVKPTPVQRNAIPILIAGRDLMACAQTGSGKTAAFCFPIISG IIRDNMVQRQRAPRTAYPLALILSPTRELASQIHDEAKKFAYQSGVRVVVAYGGAPIQQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEA DRMLDMGFEPQIRKIVEQVDMPPSGMRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLILQRVEFVQNADKRSHLMDLLHAQKESEVNGKESL TLVFVETKKGADSLEYWLCGNGFPATTIHGDRTQQERELALRSFKSGRTPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATA FFNDSNTSMARSLVDLMQEANQEVPAWLVRYASRSSYGGGKNRRGGGGGGGSRFGARDFRSEGGSFSRGGGGGGGDYYGGGGNSNGGAGGGYGVSGGGGY GMGPGVTSAWD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42520			P-loop containing nucleoside t...		Lus10016207 [exp]	0	1
AT1G04120		ATABCC5, ABCC5,...	MULTIDRUG RESISTANCE PROTEIN 5...		Lus10022858 [exp]	4.1	0.8594
AT2G42520			P-loop containing nucleoside t...		Lus10000849 [exp]	7.7	0.8330
AT3G24715			Protein kinase superfamily pro...		Lus10038159 [exp]	11.2	0.8162
AT4G30020			PA-domain containing subtilase...		Lus10006973 [exp]	11.8	0.8212
AT4G15840			BTB/POZ domain-containing prot...		Lus10002873 [exp]	13.9	0.8242
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10024182 [exp]	15.3	0.8256
AT4G39850		AtABCD1, ACN2, ...	PEROXISOME DEFECTIVE 3, COMATO...		Lus10041690 [exp]	18.8	0.8392
AT4G32640			Sec23/Sec24 protein transport ...		Lus10000939 [exp]	24.0	0.8322
AT5G54920			unknown protein		Lus10040755 [exp]	26.5	0.8120
AT4G37270		ATHMA1, HMA1	ARABIDOPSIS THALIANA HEAVY MET...		Lus10019313 [exp]	27.1	0.8037

Compare expression of checked genes

Lus10016207 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.