Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11980 732 / 0 FAR2, MS2 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) AT3G56700 389 / 3e-128 AtFAR6, FAR6 fatty acid reductase 6 (.1) AT3G44540 359 / 2e-117 FAR4 fatty acid reductase 4 (.1.2) AT4G33790 355 / 9e-116 G7, FAR3, CER4 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) AT5G22500 355 / 1e-115 FAR1 fatty acid reductase 1 (.1) AT3G44550 349 / 2e-113 FAR5 fatty acid reductase 5 (.1) AT3G44560 338 / 3e-109 FAR8 fatty acid reductase 8 (.1) AT5G22420 258 / 2e-79 FAR7 fatty acid reductase 7 (.1) AT3G60060 49 / 2e-06 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029336 [exp] 1118 / 0 AT3G11980 753 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10015974 [exp] 884 / 0 AT3G11980 735 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10000851 [exp] 417 / 2e-138 AT3G11980 459 / 2e-155 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10020584 [exp] 364 / 4e-119 AT4G33790 627 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10006264 [exp] 364 / 4e-119 AT4G33790 624 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10036824 [exp] 296 / 1e-92 AT3G44540 461 / 6e-159 fatty acid reductase 4 (.1.2) Lus10019187 [exp] 292 / 3e-91 AT3G44540 444 / 4e-152 fatty acid reductase 4 (.1.2) Lus10000852 [exp] 212 / 2e-62 AT3G11980 181 / 9e-52 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10036821 [exp] 86 / 4e-19 AT3G44540 143 / 5e-41 fatty acid reductase 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G062200 [exp] 845 / 0 AT3G11980 754 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.006G196500 [exp] 778 / 0 AT3G11980 699 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.016G031600 [exp] 506 / 1e-174 AT3G11980 503 / 9e-174 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.004G185000 [exp] 366 / 3e-120 AT4G33790 588 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.004G185100 [exp] 364 / 2e-119 AT4G33790 594 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.009G144900 [exp] 358 / 3e-117 AT4G33790 618 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.009G145000 [exp] 353 / 3e-115 AT4G33790 578 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.019G075201 [exp] 351 / 3e-114 AT3G44540 515 / 1e-180 fatty acid reductase 4 (.1.2) Potri.009G145100 [exp] 60 / 4e-11 AT3G44540 79 / 1e-18 fatty acid reductase 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07993 [flax] [poplar] NAD_binding_4 Male sterility protein CL0063 [flax] [poplar] PF03015 [flax] [poplar] Sterile Male sterility protein
Representative CDS sequence Show only first row Show all	>Lus10016208 pacid=23142638 polypeptide=Lus10016208 locus=Lus10016208.g ID=Lus10016208.BGIv1.0 annot-version=v1.0 ATGGGGACTTTCTCCCTCCATTGTCCTCCTCCTCCTCCTCCTCCTCCACCTTCCCCTCCCTCACTTCTTGTACAAACAAATAAAGCTGTCAAGATCTCTG CTGGCGGCCATTGTTGGACTACGAGGAGGAGGAAAAGTCTTCTTACCTCATCATCTTCTAGTGTTGTGTTCTGTCAAAGTGGAGGGAACACAACCAGGTG TGGAGTTGGTGGTGGAGGTGGAGGAAGTGTTTCTTCAGTTTTTGGTGGGAGAACATCAGCATTGGTTACTCCTACTACTACTGATCAGGAGCAACAAAGC TCATCAGCTGTGGTGATGGATGCTGCTACTAGTAGCTTGGTTTTGGCCCCAAATGGTAAAGGACAGCCTGAGATTGCTGTGAAGGATTTAATCCCTCCTT ATGGCGAACCAACAAGTTCTAGTCAGGAAGGTATCGGCATTGTCAGGTTTCTAAGAGGGAAAGGGTTCTTCATTACTGGTGCAACCGGCTTCCTCGCTAA AGTTCTGATTGAAAAGATACTGAGGACAATGCCTGATGTGGGAAAGATATATTTGTTGATCAAGGCCAAGAACAAGGATGCTGCAATGTCGAGATTGAAA ACTGATATACTAAATGCAGAACTGTTCACGTCTCTCCGGCAAACCTATGGGAAATCCTACCACACTTTCATGTTGAGCAAACTAATCCCTGTAGCCGGAG ATGTCTGCGAATCGAATCTTGGGTTGGAACAAGAGATAGCAGATTTGATTGCTGATGATGTTGATGTGATTGTGAATTCTGCTGCCAGTACTACTTTCGA CGAAAGATATGATGTGGCCATTGACATCAATACAAGGGGACCTTCCAACCTCATGAGTTTCGCCAAGAAATGTGAAAAGCTGAAGCTCTTCTTGCAAGTA TCAACCGCGTATGTTAACGGGCAAAGACAAGGAAGAATCATGGAGAGGGCATTCGGTATGGGAGACTGCATAGCTGAGGAGAACAGTAATCCTGCATCGA GATTTACGCTGGACATCGAGGGCGAAGTGAAGCTGGTTCTGGACTCCAAGGAAGCATTTCACCCTGACGAAATCGCAACCAAGATGAGGGACCTTGGATT AGAAAGGGCAAGGAAATACGGCTGGCAAGATACCTATGTGTTCACAAAGGCCATGGGAGAAATGGTGATCGATAATATGAGAGGCGAGATTCCTGTTGTC ATTCTCAGACCGAGTGTGATTGAGAGCACTTACAAAGAACCGTTCCCTGGATGGATGGAAGGCAACAGGATGATGGATCCAATAGTCTTGTACTACGGGA AAGGGCAGCTCACTGGATTTTTGGTGGATCCAAATGGTGTTCTTGACGTGGTCACAGCAGATATGGTGGTGAATGCAACATTGGCAGCAATGGCCAGGCA CGGAACGGATCAGAAACCAGAGATAAACGTCTACCAAATAGCTTCTTCAGTAGTGAACCCACTCATCTTCAAGGACCTAGCTACACTGCTCTACGAACAC TACAATGCATCTCCATACATGGACTCGAACGGCTTCCCAATCACCGTGCCACTGATGAAACTCTTCAGCTCCATGGACGAATTTTCGGACCACCTGTGGA AAGATGTGGTCCAGAGAAACGGGTTGACATCAGCAGTCGCCTCATCGGACGGGAAACTGTCCCAGAAGCACGAATTCATCTGCCGGAAATCAGTCGAGCA GGCCAAGTACCTCGCCAACATATACGAACCGTACACATTCTACGGTGGAAGATTCGACAACAGCAACGGGGAGGGACTGATGGAGATGATGTCTGAGGTC GAGAAGAGGAAGTTCGGGTTCAATGTGGGGAGTATAGACTGGAGAGATTACATCACTAATGTTCATATCCCTGGGTTGAGGAGGCATGTGATGAAGGGAA GAGGAACAAGCAGCAGCAGCAGCAGCTGA
AA sequence Show only first row Show all	>Lus10016208 pacid=23142638 polypeptide=Lus10016208 locus=Lus10016208.g ID=Lus10016208.BGIv1.0 annot-version=v1.0 MGTFSLHCPPPPPPPPPSPPSLLVQTNKAVKISAGGHCWTTRRRKSLLTSSSSSVVFCQSGGNTTRCGVGGGGGGSVSSVFGGRTSALVTPTTTDQEQQS SSAVVMDAATSSLVLAPNGKGQPEIAVKDLIPPYGEPTSSSQEGIGIVRFLRGKGFFITGATGFLAKVLIEKILRTMPDVGKIYLLIKAKNKDAAMSRLK TDILNAELFTSLRQTYGKSYHTFMLSKLIPVAGDVCESNLGLEQEIADLIADDVDVIVNSAASTTFDERYDVAIDINTRGPSNLMSFAKKCEKLKLFLQV STAYVNGQRQGRIMERAFGMGDCIAEENSNPASRFTLDIEGEVKLVLDSKEAFHPDEIATKMRDLGLERARKYGWQDTYVFTKAMGEMVIDNMRGEIPVV ILRPSVIESTYKEPFPGWMEGNRMMDPIVLYYGKGQLTGFLVDPNGVLDVVTADMVVNATLAAMARHGTDQKPEINVYQIASSVVNPLIFKDLATLLYEH YNASPYMDSNGFPITVPLMKLFSSMDEFSDHLWKDVVQRNGLTSAVASSDGKLSQKHEFICRKSVEQAKYLANIYEPYTFYGGRFDNSNGEGLMEMMSEV EKRKFGFNVGSIDWRDYITNVHIPGLRRHVMKGRGTSSSSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10016208 [exp]	0	1
AT1G03220			Eukaryotic aspartyl protease f...		Lus10021938 [exp]	2.0	0.9268
AT5G35740			Carbohydrate-binding X8 domain...		Lus10012324 [exp]	3.2	0.9256
AT2G28200	C2H2ZnF		C2H2-type zinc finger family p...		Lus10038674 [exp]	4.7	0.8879
AT5G19730			Pectin lyase-like superfamily ...		Lus10041815 [exp]	5.9	0.9004
AT2G17080			Arabidopsis protein of unknown...		Lus10014446 [exp]	6.9	0.9069
AT4G09600		GASA3	GAST1 protein homolog 3 (.1)		Lus10025962 [exp]	7.1	0.9134
AT1G09570		FHY2, HY8, FRE1...	ELONGATED HYPOCOTYL 8, FAR RED...		Lus10007594 [exp]	13.6	0.8966
AT1G60783			unknown protein		Lus10006204 [exp]	14.3	0.8475
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003453 [exp]	16.9	0.8658
AT1G79910			Regulator of Vps4 activity in ...		Lus10011455 [exp]	18.4	0.8565

Compare expression of checked genes

Lus10016208 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.