Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44130 206 / 4e-63 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G15670 196 / 9e-60 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G80440 189 / 4e-57 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G59940 177 / 5e-52 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G16250 82 / 3e-17 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G60570 78 / 8e-16 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G55270 78 / 1e-15 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 76 / 3e-15 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G27420 71 / 1e-13 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G03030 71 / 2e-13 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029329 [exp] 655 / 0 AT1G15670 195 / 3e-59 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10017300 [exp] 386 / 3e-134 AT1G15670 203 / 9e-63 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10013538 [exp] 359 / 6e-124 AT1G15670 192 / 7e-59 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10000704 [exp] 92 / 3e-20 AT4G03030 391 / 4e-131 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10022061 [exp] 83 / 2e-17 AT3G63220 476 / 7e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10028121 [exp] 82 / 4e-17 AT1G30090 583 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10001071 [exp] 82 / 6e-17 AT1G55270 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10042824 [exp] 82 / 7e-17 AT1G30090 578 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10019425 [exp] 81 / 1e-16 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G196900 [exp] 434 / 5e-153 AT1G15670 211 / 7e-66 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G007000 [exp] 374 / 3e-129 AT1G15670 198 / 1e-60 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G218400 [exp] 357 / 1e-122 AT2G44130 185 / 4e-55 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G178300 [exp] 215 / 5e-67 AT1G80440 362 / 2e-124 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G178500 [exp] 208 / 2e-64 AT1G15670 310 / 5e-104 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.007G147000 [exp] 197 / 6e-59 AT3G59940 300 / 4e-98 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.017G000700 [exp] 186 / 7e-55 AT3G59940 283 / 2e-91 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.005G211700 [exp] 85 / 3e-18 AT3G63220 510 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.006G193800 [exp] 85 / 5e-18 AT1G30090 604 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G050600 [exp] 84 / 6e-18 AT3G63220 535 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10016214 pacid=23142733 polypeptide=Lus10016214 locus=Lus10016214.g ID=Lus10016214.BGIv1.0 annot-version=v1.0 ATGACCAAGTTCGAGCTTTCTTCGTCGGAGCTAATCCCCGGCTTACCGGACGACATAGCCATGGAGTGTCTACTCCGACTACACTTTACATCCCACGCCG TCGCATCCCAGGTCTGCAGCCGGTGGCGCCACCTCGTCCGGAGCAGAGACTTCTACAATCACCGCAGAAACACCGGCCACACTCGCAAAGCTGCATGTCT AATCCACGCGCTCTCCACTCCCGAACCGAACAACAAACCGCTCGGCCCGACGAGGTACGGGTTAACCATGTTCGACCCAGTGACTGGGTCATGGGAACGG ATCATGGCGTCAGTACTCGATTACCCGGGGGGGCTTCCGTTGTTCTGTCAGGTGGTGAGCTCAGAGGGGAAGCTGGTGGTGATTGGCGGGTGGGATCCGG TTGACTACCAGCCTGTGAGACACGTGTCGGTCTACGATTTCACCACCCGGAAGTGGAGGCAGGGGAAGGCCATGCCGGAGTCCCGGTCGTTATTTGTGGC GACGGCGGCGCACTGTGGCAAGGTCGTCGTCGCCGGCGGACATGACGAGAACAAAAACGCGCTGAGGAGCGCGTGGATGTACGATGTGTACGCCGACGAG TGGGAGGAGCTTCCACCGATGAGCCAGGAGCGGGACGAGTGCGGAGCGGTGGTGATCGGGTCGCAGGTATGGGTCGTCGGAGGGTACCGGACCGACAGAC AGGGTCAATTCGAGTCGAGCGCCGAGGTGATCGACATCCACGAATTGAAATGGAGGCGCGTGGAGGAGGCATGGAAAGAGGGGCGGTGTCCGAGGTCGTG CCTCGGGGTAAGGAATTTGAACGGCGGGGAGAAGGCTGCGGCGGAGAAGCTGTTCGATTGGGCAGAGATGGGCGGCGGAGAGGTGAAGGTGGGAGCTTGT GGGGTCCAGTTGGGAAGGGGAATGACACTTGTCTCCGGGTCCGCTTACCAAGGGGGACCGCAGGGGTTTTATGTAGTGGAAGGGCAAAATGGTAAATGGA ACAAGTTGAGCGTTCCCAGTGAGTTCGCCGGGTTTATACAATCCGGGTGCTGTGCTGAAGTGTGA
AA sequence Show only first row Show all	>Lus10016214 pacid=23142733 polypeptide=Lus10016214 locus=Lus10016214.g ID=Lus10016214.BGIv1.0 annot-version=v1.0 MTKFELSSSELIPGLPDDIAMECLLRLHFTSHAVASQVCSRWRHLVRSRDFYNHRRNTGHTRKAACLIHALSTPEPNNKPLGPTRYGLTMFDPVTGSWER IMASVLDYPGGLPLFCQVVSSEGKLVVIGGWDPVDYQPVRHVSVYDFTTRKWRQGKAMPESRSLFVATAAHCGKVVVAGGHDENKNALRSAWMYDVYADE WEELPPMSQERDECGAVVIGSQVWVVGGYRTDRQGQFESSAEVIDIHELKWRRVEEAWKEGRCPRSCLGVRNLNGGEKAAAEKLFDWAEMGGGEVKVGAC GVQLGRGMTLVSGSAYQGGPQGFYVVEGQNGKWNKLSVPSEFAGFIQSGCCAEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44130			Galactose oxidase/kelch repeat...		Lus10016214 [exp]	0	1
AT3G61930			unknown protein		Lus10002685 [exp]	4.5	0.8286
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10016631 [exp]	13.6	0.7857
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10010022 [exp]	14.7	0.8071
					Lus10027950 [exp]	15.1	0.8273
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10026807 [exp]	15.7	0.7533
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Lus10009340 [exp]	19.0	0.8208
AT2G30600			BTB/POZ domain-containing prot...		Lus10016014 [exp]	19.6	0.7595
AT3G61930			unknown protein		Lus10030203 [exp]	20.9	0.8286
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10016632 [exp]	26.2	0.7973
AT5G02640			unknown protein		Lus10023327 [exp]	26.3	0.8126

Compare expression of checked genes

Lus10016214 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.