Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55310 93 / 2e-23 ATSCL33, SR33, At-SCL33 SC35-like splicing factor 33 (.1.2.3) AT3G13570 83 / 1e-19 SCL30A, At-SCL30A SC35-like splicing factor 30A (.1) AT5G18810 66 / 2e-13 SCL28, At-SCL28 SC35-like splicing factor 28 (.1) AT3G55460 63 / 4e-12 SCL30, At-SCL30 SC35-like splicing factor 30 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029328 [exp] 172 / 1e-54 AT1G55310 160 / 2e-49 SC35-like splicing factor 33 (.1.2.3) Lus10013539 [exp] 90 / 4e-23 AT1G55310 119 / 5e-34 SC35-like splicing factor 33 (.1.2.3) Lus10017299 [exp] 90 / 5e-23 AT1G55310 120 / 9e-35 SC35-like splicing factor 33 (.1.2.3) Lus10000953 [exp] 55 / 6e-09 AT2G39670 588 / 0.0 Radical SAM superfamily protein (.1.2) Lus10002699 [exp] 54 / 9e-09 AT3G55460 138 / 3e-39 SC35-like splicing factor 30 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G006400 [exp] 95 / 3e-24 AT3G13570 170 / 3e-52 SC35-like splicing factor 30A (.1) Potri.003G218600 [exp] 95 / 4e-24 AT3G13570 177 / 7e-55 SC35-like splicing factor 30A (.1) Potri.016G062500 [exp] 85 / 1e-20 AT3G13570 167 / 9e-52 SC35-like splicing factor 30A (.1) Potri.006G197000 [exp] 83 / 7e-20 AT1G55310 187 / 8e-59 SC35-like splicing factor 33 (.1.2.3) Potri.008G196700 [exp] 68 / 6e-14 AT5G18810 168 / 8e-52 SC35-like splicing factor 28 (.1) Potri.010G026100 [exp] 64 / 2e-12 AT5G18810 172 / 2e-53 SC35-like splicing factor 28 (.1) Potri.010G203200 [exp] 62 / 8e-12 AT3G55460 144 / 1e-41 SC35-like splicing factor 30 (.1) Potri.008G056600 [exp] 59 / 9e-11 AT3G55460 134 / 6e-38 SC35-like splicing factor 30 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10016215 pacid=23142633 polypeptide=Lus10016215 locus=Lus10016215.g ID=Lus10016215.BGIv1.0 annot-version=v1.0 ATGAGGGGAAGAAGCTACAGTTACAGTCCCTCTCCACCGAGAGGCTACGAAAGGAGGCGAAGAAGCCCTAGCCTGAAGGGGCGATACAGAGGCCGAAGCA GGGATCTGCCAACTAGTCTTCTTGTTCGGAACCTTCGTCATGATTGCAGGCCTGATGATTTACGTGGGGCATTTGGGCAGTTTGGTCCTTTAAAGGACAT TTATCTTCCTCGTGATTATTATACAGGTCAAGATCTTCAGCGGAATTGGAGTCACGATCTTAGGGTAGGGACAGTATCGACCGCAGGAGGTCCCCTTCGC CAAGATATCGACGCAGCAGGTATTCAAGGAGTCCCGACTACTATTCTCCCTCTCCTAGAAGCCGGCGCCACTCAAGGTCAATATCCCCAAGGGACAGGGA ATACAGGTCAATCTCTCCGAGGGAGAGAAGCTACAGGGAGCGTTCATATTCACAGTCGAGATCACCATATTCGGAGAGGAACCGGAGCCCTGGTCGAAGC AGGAGCCCTAGCTATGAATAGTGTTGTCTATACAAGTTGCGGGGGAGGGTAA
AA sequence Show only first row Show all	>Lus10016215 pacid=23142633 polypeptide=Lus10016215 locus=Lus10016215.g ID=Lus10016215.BGIv1.0 annot-version=v1.0 MRGRSYSYSPSPPRGYERRRRSPSLKGRYRGRSRDLPTSLLVRNLRHDCRPDDLRGAFGQFGPLKDIYLPRDYYTGQDLQRNWSHDLRVGTVSTAGGPLR QDIDAAGIQGVPTTILPLLEAGATQGQYPQGTGNTGQSLRGREATGSVHIHSRDHHIRRGTGALVEAGALAMNSVVYTSCGGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55310		ATSCL33, SR33, ...	SC35-like splicing factor 33 (...		Lus10016215 [exp]	0	1
AT3G03310		ATLCAT3	ARABIDOPSIS LECITHIN:CHOLESTER...		Lus10026853 [exp]	2.0	0.9156
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10040528 [exp]	4.1	0.9296
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10021159 [exp]	5.8	0.9281
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10040527 [exp]	8.3	0.9243
AT1G74320			Protein kinase superfamily pro...		Lus10026145 [exp]	9.5	0.9096
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Lus10031154 [exp]	10.7	0.9040
AT5G08060			unknown protein		Lus10021149 [exp]	11.5	0.9027
AT3G07090			PPPDE putative thiol peptidase...		Lus10038168 [exp]	11.6	0.8835
AT1G53900			Eukaryotic translation initiat...		Lus10037451 [exp]	16.5	0.8262
AT4G11660	HSF	AT-HSFB2B, HSFB...	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10008007 [exp]	16.5	0.8738

Compare expression of checked genes

Lus10016215 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.