Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11964 1686 / 0 RNA binding;RNA binding (.1) AT3G51110 60 / 8e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G29060 52 / 6e-06 EMB2726 embryo defective 2726, elongation factor Ts family protein (.1.2) AT1G12800 47 / 0.0002 Nucleic acid-binding, OB-fold-like protein (.1) AT3G03710 47 / 0.0002 PDE326, PNP, RIF10 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) AT5G41770 46 / 0.0003 crooked neck protein, putative / cell cycle protein, putative (.1) AT5G45990 44 / 0.001 crooked neck protein, putative / cell cycle protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029327 [exp] 3470 / 0 AT3G11964 2127 / 0.0 RNA binding;RNA binding (.1) Lus10041477 [exp] 52 / 4e-06 AT5G41770 1161 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Lus10034294 [exp] 52 / 4e-06 AT5G41770 1153 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Lus10022346 [exp] 48 / 0.0001 AT5G28740 905 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041573 [exp] 47 / 0.0001 AT5G28740 1386 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039811 [exp] 47 / 0.0002 AT4G03430 1560 / 0.0 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1) Lus10018580 [exp] 46 / 0.0004 AT4G03430 1566 / 0.0 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1) Lus10001332 [exp] 45 / 0.0007 AT3G03710 954 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G062600 [exp] 2454 / 0 AT3G11964 2209 / 0.0 RNA binding;RNA binding (.1) Potri.001G094400 [exp] 56 / 4e-07 AT5G41770 1117 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Potri.014G148500 [exp] 52 / 2e-06 AT3G23700 439 / 2e-153 Nucleic acid-binding proteins superfamily (.1) Potri.003G137200 [exp] 52 / 4e-06 AT5G41770 1150 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Potri.019G040100 [exp] 48 / 0.0001 AT3G03710 1197 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Potri.004G035600 [exp] 47 / 0.0001 AT5G28740 1418 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G135300 [exp] 47 / 0.0002 AT4G03430 1470 / 0.0 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1) Potri.005G197900 [exp] 45 / 0.0007 AT1G71720 501 / 2e-174 PIGMENT DEFECTIVE 338, Nucleic acid-binding proteins superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF05843 [flax] [poplar] Suf Suppressor of forked protein (Suf) CL0021 [flax] [poplar] OB PF00575 [flax] [poplar] S1 S1 RNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10016216 pacid=23142668 polypeptide=Lus10016216 locus=Lus10016216.g ID=Lus10016216.BGIv1.0 annot-version=v1.0 ATGGCAGCTCCGTCGTCTAAGAAGAGGACTCAAAACAGGAATCCTAAAGAAGCTCCGAAGTTCAACAAGGATTCTAAGAAGCCATTCAAAGCTAAGAAGA AGGACTCTAGTGATGTCGTTGCAAAAAAAACTGAATCCGCCGCCAAGTCTTTGCAGCTGGAAGATGACGTTCCTGACTTCCCCCGAGGTGGAGGGAGCAC TCTAAGCCAGAAAGAGCGTGATGATATACGATCGGAAGTTGATGCGGAGTTTGAGGCCGGCGAGATGGGTGTAAGAAAGAACAAAAAGGGTAAGAAACCG CGAAAGAAACAAGTAGACCCAGACGATTTCGGTTCCCTCTTTGGAGATGGGTTAACTGGCAAGCTACCCAAGTTTGCCAATAAGATCACAACAAAGAATA TTTCTCCTGGAATGAAGCTCTGGGGAGTTATTGCTGAAGTAAACGAAAAGGACCTTGTAATTAGTCTCCCAGGAGGACTGCATGGATTAGTCCGTAATAC TGATGCTGTCGATTCTATTTGGGATGATGAAACCAAGGAAAATGAGGGTTATCGTCCCAACACATTCCATGTGGGGCAGCTGGTTTCCTGCATTGTCTTG CAGTTGGATGACGATAAAAAGGGGAAAAGAAAGATATGGCTTTCTCTGTGCCTTTCATTATTACACAAGGGGTTTTCACTGGACACAATACAGGAAGGGA TGGTACTCACATCATATGTGAAGAGCATTGAAGATCATGGCTATATTTTTCACTTCGGAGTGCCTTCTTTTTCTGGGTTTCTCCCTAAGACCAGCCAGTC TGACTCACGTGATGCAGTGGTGAAGCCTGGTCAACTCTTGAAAGGGGTTATTACTAAGATTGATAAAAACCGGAAAGTTGTTTTTTTGAGTGCTGACAAG GATATGGTGTCGAAATATGTGATGTCGGATGTTAAAGGAATGTCAATCGATCTTCTCATTCCTGGAATGATGGTGAATGCACGTGTACAGACAACGCTTG AAAATGGTGTTATGTTCTCCTTCCTTACATACTTCACTGGAACTGTTGATATGTTCCATTTGCAAAGTTCTTTTCCTGCTACGAACTGGAAAGATGATTA TAGCAAGAATAAGAAGGTTATTGCTCGTATATTATTTATTGACCCGTCTACTAGAGCTGTTGGCTTGACTCTTAATCGACATCTTGTTCAAAACAATAGT CCTCCAACGCTTGTCAAAGTTGGAGATATTTGTGACAATGCAAAAGTGGTTTGGGTAGATAAAAATATGGGGCTCTTGCTTGAGATCCCTTCGATTCCGG TATCCATTCCAGCTTTTGTTAGTATACCTGATGTTGCTGAAGCTGAAGTGCCAAAGCTGGAAAAGAAGTTTAAGGAGCGCAGTATTGTCCGTGTGAGAAT AATTGGTTTTAGGCATTTGGAAGGACTTGCTACAGGAACTCTGAAGGAAAGTGCTATTGAAGGCCCTGTTTTTACCCACTCAGAGGTTCAACCAGGAATG GTTGTGAGGGGTAAAATCATAGCAGTGGATAGCTTTGGTGCTATTGTGCAGTTTCCTGGTGGTTTGAAGGCACTTTGCCCTCTTCAGCACATGTCTGAAT TTGAAATTGCAAAGCCGAGGAAAAAGTTCCAGGTTGCTGCCGAACTAACTTTTCGTGTGCTTGGCTGCAAGTCGAAAAGGATAACTGTCACTCACAAGAA AACGCTTGTTAAGTCAAAACTTCCAATCATTAGTTCATATGCAGAAGCTACTGATGGACTAGTTGTACATGGTTGGATAACAAAGATTGAAAAGCATGGA TGCTTCGTCCATTTTTACAATGGAGTCCAGGGATTTGCTCCAAGGCTATCTGAGCTTGGCTTAGAACCAGGAAGTGAACCAAACTCAATGTATCACCTTG GCCAAGTTATCAAATGCAGAGTAACAAGTTCTGTTCCTTCATCTCGTCGAATCAACCTAAGCTTCATGATGAAGGCTACAAGCCTTTCTGAAGAAGATTC TTTGAAGCTGGGGAATGTTGTTACAGGATTGGTTGAGAAAGTCACTCCATCTGTTGTTGTTGTGAATATTAATGGGAAGCAATACCTTAAGGGTACCATT GCTAATGAACATATGGCTGATCATCATGGACTAGCGGTCTTGTTGAAGTCGGTCTTGAAGCCTGGACATGAATTTGACAAACTCGTAGTCCTTGATATTG AGGGCAATAATGTAATACTCTCGGCCAAATACTCACTCATCAATTCAGCGCAAGAGCTTCCTTCAGATATAAGTCAGATTCGTCCACACTCAATTGTACA TGGTTACATTTGCAACATAATTGAAACCGGCTGCTTTGTTCGCTTTCTTGACCGGTTGACTGGTTTCTCCCCTAGAAGCAAGTCAATGGATGATACTAGT GTTCAGCTTTCGGAAGCATTCCACATAGGACAGTCTGTGCGTAGTAATATCGTTGAGGTGAATAGTGAAACAAATAGAGTCACATTGTCCCTGAAGCAGT CAATTTGTGCATCAGCTGATGCATCTTTTCTGCAGAGTTATTTTCTCTCTGATGACAAGATTGCAAAGTTCCAGTCAACTGATACTGAAGGCCCAGACTT CCAATGGGTTGAAGAATTTGGAGTTGGCAGCATCACTGAAGGAAGAATCCAAGAGTCCAAAGAATTTGGAGTTGTCGTGAGCTTCGACAAATATAAAAAT GTTCTTGGTTTTATTACCAATTATCAATTGGGCGGGACGACCGACGGCACAGGATCGATCATACAAGCAGCTATACTAGATGTTTCCAGGAGTGAACGCC TAGTTGACTTAACCTTGAAACCAGAGCTCTTGAATAAATTCCGAGATCAGAGCTCCTGTAAAAAGAGTCAAAAGAAGAAGCGCAAAAGTGAAGTGTGTAA GGACTTGGAAGTGAATCAAAAAGTGAATGCCATTGTAGAGATTGTGAAGGAGAATTACATGGCAAGTGTTCTTTCACTCCCGGAATACAATTACACTATA GGCTATGCTTCATTATCCGACTACAATTCTCAGAGACTGCCTCACAGGCAAATTGTGAATGGACAAAGTATTACAGCTACCATTGTGGCTCTTCCAAGCC CTTCCACAACTGGCAGGTTGCTTTTGATGCTCAATTCTACCGGCCAAATTACTGAGACATCCAGTTCAAAGAAGGCAAAAAAGAAGGCTAACTTTGATGT TGGATCACTTGTTCAAGTGGAGGTTACTGAAAAGAAGCCACTTGAAATGCGAGTGAAATTTGGTGCTGGTCTTCGTGGAAGAATCCATGCGACAGAGGTA ACTAATGCTGGAATCATTGAAGACCCATTTAGTGAATTCCGAACTGGTCAAACTTTGACGGCTAGGATTGTTGCAAAGTCTGGCCAATCGAACATTAAGA ACGGCGTGCTGTGGGAACTGTCTGGGAAGGCTGAAGTGTTGGCAGATGAAAGTGACAACATATCTGACAACCTTGAGTTTTCATCTGGACAATGTGTCGG CGGCTATGTATATAAAGTAGACAGTGAATGGGTTTGGTTGGCCATATCTCGAAGCGTAAATGCACAACTATTTTTATTAGATAGTTCTTCTGAACCTGGT GAGCTTCAGGAATTTCAGAACCGTTTTGCTGTGGGAAAGCTTGTCAGGGGGTATGTTTTAACGTACAACAGAGCAAAGAAATTGCTTCGTCTCGGTATGC ATCCGTTACGTCCACTCAAGCAAATTGACAATGTGGCCCCTCATATTCACGAAGGAGATGTGGTCGGGGGGAGAATTTCAAGGGTACTTCCAGGTGTAGG TGGACTGTTTGTCCAAATTGGCCCTCATTTACATGGTAAAGTTCATTTCACAGAACTTAAAGATGAGTGGACTGCTGACCCTTTGGCTGAGTATCATGAA GGACAGTTTGTCAGATGCAAGGTTCTGGAAATCGGCCTGTCAATTAAGGGCACTGCTCATATAGATTTGTCACTACGTTCATCTTTTGATGGCATGTGTG GTCAGAGCTCAGTGGAATCATCTGGAATCACGCATGTCGAAAAGATTGAGGATCTTCACCCAAATGACGTTGTTCAGGGTTATGTGAAGAGTATTACGGC AAAAGGATGTTTCATTTTGCTTTCGCGTAAGCTCGAAGCAAAAGTACTTGTCTCAAATCTATCTGATGGATATATTGAAAAACCCGAAACAGAATTCCCC GTGGGTAAACTTGTTGTTGGAAGGGTATTGTCCGTGGAGCCTTTGTCAAAACGAATTGAAGTTACTCTGAGGACAACAAAATCTGGCAATGAATCAAAAT CTGAGGGGAATGATTTAAGCCACCTGCGTGTTGGAAGAATAGTTTCTGGCTCGATTAGGCGAGTGGAACCATATGGTCTATTTGTAACTCTAAGCAATTC AAACATGGTCGGGTTGTGTCACATATCAGAGCTTCCAGCTGATCAGGCCAACGACACTCTAAGTAACTATAAAGCTGGGGAGAAGGTTACGGTGAAGATT CTACAGGTTGATGAGGAAAGGCGTCGAATCTCTCTTGGAATGACAGACTTGGATACGGAAAACAACGACGATGAATCTGTTGAAGGGGAAGAGGAAGATG GTGATTCGGATGATGATGACACTGACACCAACATTACACTGCTACCCGAGAGAGACGATTCAGAATCAGAAGACGAAAGTAAAGAATGTCCATTTCCCGA AGCAGAATCTAGAGCTTCCATTCCTCCTTTGGAGGTCACCCTGGATTATATGGAAGAGGATCAAGCAGACGATTGGGTAGCTTCTGATAACCAGGATAAC AATGTTGAGCCTGGTACCAAAGACAAAAAGAAAAAGGAAAAAAGTAAAACGAGGGGGGAAAGGGAGAAAGAGATTAGAGCTGCTGAAGAGAGACTGCTGG AAAAGGATATTGTACCAGAAACTGCTGATGAATTTGAGAAACTCCTGCGCGGCTCTCCCAATAGTAGCTTTATTTGGATCAAGTACATGGCTTTCTTGCT TAACACGTCGGATGTAGAGAAAGCTCGGTCGGTTGCTGAAAGGGCTCTGAGGACGATAAGTTTCCGTGAAGAGGGCGAGAAACTGAATATCTGGGTAGCT TACTTCAATTTGGAAAACGAGTACGGCATGCCTCGAGAGGAGGTGGTCAACAAATTATTCACTAGAGCATTGCAATTCTGCGATTCGAAGAAGGTCCATA TGGCACTATTGGGGATGTACGAGAGGACTGAACAAGATAAGCCTGCTGATGAACTTGTCAACAAAATGGTCAGGAAGTTCAAGCAATCATGCAAGGTTTG GTTAGCGAGAATGCGGAGGGTTATAAGCCAAGAGGAAGACAAAGTTCAGTCAGTTGTACAACGAGCCTTAATGAGCCTTCCACGGCGTAAACACATCAAA TTCGTCACGCAAGCTGCACTCCTCGAGTTCAAAAGCGGGCTTGCTGATAGAGGCCGGAGCATGTTCGAAGGAGTTTTGAGAGAGTACCCGAAGCGAACGG ACTTGTGGAGCATTTACATCGACCAAGAAATCAAGCATGGAGATGCTGATATGACCCGTTCATTGTTTGAGAGAGCAATTACACTGAGCCTGGCGCCTAA AAAGATGACTTTCTTGTTCAAGAAGTATCTTGAGTACGAGAAGTCAATGGGCGACTCTGAAAAAATTGAGGCTGTGAAGCAGAAAGCCCTCGACTATGCT CGATCTGAACTGGTTTAG
AA sequence Show only first row Show all	>Lus10016216 pacid=23142668 polypeptide=Lus10016216 locus=Lus10016216.g ID=Lus10016216.BGIv1.0 annot-version=v1.0 MAAPSSKKRTQNRNPKEAPKFNKDSKKPFKAKKKDSSDVVAKKTESAAKSLQLEDDVPDFPRGGGSTLSQKERDDIRSEVDAEFEAGEMGVRKNKKGKKP RKKQVDPDDFGSLFGDGLTGKLPKFANKITTKNISPGMKLWGVIAEVNEKDLVISLPGGLHGLVRNTDAVDSIWDDETKENEGYRPNTFHVGQLVSCIVL QLDDDKKGKRKIWLSLCLSLLHKGFSLDTIQEGMVLTSYVKSIEDHGYIFHFGVPSFSGFLPKTSQSDSRDAVVKPGQLLKGVITKIDKNRKVVFLSADK DMVSKYVMSDVKGMSIDLLIPGMMVNARVQTTLENGVMFSFLTYFTGTVDMFHLQSSFPATNWKDDYSKNKKVIARILFIDPSTRAVGLTLNRHLVQNNS PPTLVKVGDICDNAKVVWVDKNMGLLLEIPSIPVSIPAFVSIPDVAEAEVPKLEKKFKERSIVRVRIIGFRHLEGLATGTLKESAIEGPVFTHSEVQPGM VVRGKIIAVDSFGAIVQFPGGLKALCPLQHMSEFEIAKPRKKFQVAAELTFRVLGCKSKRITVTHKKTLVKSKLPIISSYAEATDGLVVHGWITKIEKHG CFVHFYNGVQGFAPRLSELGLEPGSEPNSMYHLGQVIKCRVTSSVPSSRRINLSFMMKATSLSEEDSLKLGNVVTGLVEKVTPSVVVVNINGKQYLKGTI ANEHMADHHGLAVLLKSVLKPGHEFDKLVVLDIEGNNVILSAKYSLINSAQELPSDISQIRPHSIVHGYICNIIETGCFVRFLDRLTGFSPRSKSMDDTS VQLSEAFHIGQSVRSNIVEVNSETNRVTLSLKQSICASADASFLQSYFLSDDKIAKFQSTDTEGPDFQWVEEFGVGSITEGRIQESKEFGVVVSFDKYKN VLGFITNYQLGGTTDGTGSIIQAAILDVSRSERLVDLTLKPELLNKFRDQSSCKKSQKKKRKSEVCKDLEVNQKVNAIVEIVKENYMASVLSLPEYNYTI GYASLSDYNSQRLPHRQIVNGQSITATIVALPSPSTTGRLLLMLNSTGQITETSSSKKAKKKANFDVGSLVQVEVTEKKPLEMRVKFGAGLRGRIHATEV TNAGIIEDPFSEFRTGQTLTARIVAKSGQSNIKNGVLWELSGKAEVLADESDNISDNLEFSSGQCVGGYVYKVDSEWVWLAISRSVNAQLFLLDSSSEPG ELQEFQNRFAVGKLVRGYVLTYNRAKKLLRLGMHPLRPLKQIDNVAPHIHEGDVVGGRISRVLPGVGGLFVQIGPHLHGKVHFTELKDEWTADPLAEYHE GQFVRCKVLEIGLSIKGTAHIDLSLRSSFDGMCGQSSVESSGITHVEKIEDLHPNDVVQGYVKSITAKGCFILLSRKLEAKVLVSNLSDGYIEKPETEFP VGKLVVGRVLSVEPLSKRIEVTLRTTKSGNESKSEGNDLSHLRVGRIVSGSIRRVEPYGLFVTLSNSNMVGLCHISELPADQANDTLSNYKAGEKVTVKI LQVDEERRRISLGMTDLDTENNDDESVEGEEEDGDSDDDDTDTNITLLPERDDSESEDESKECPFPEAESRASIPPLEVTLDYMEEDQADDWVASDNQDN NVEPGTKDKKKKEKSKTRGEREKEIRAAEERLLEKDIVPETADEFEKLLRGSPNSSFIWIKYMAFLLNTSDVEKARSVAERALRTISFREEGEKLNIWVA YFNLENEYGMPREEVVNKLFTRALQFCDSKKVHMALLGMYERTEQDKPADELVNKMVRKFKQSCKVWLARMRRVISQEEDKVQSVVQRALMSLPRRKHIK FVTQAALLEFKSGLADRGRSMFEGVLREYPKRTDLWSIYIDQEIKHGDADMTRSLFERAITLSLAPKKMTFLFKKYLEYEKSMGDSEKIEAVKQKALDYA RSELV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11964			RNA binding;RNA binding (.1)		Lus10016216 [exp]	0	1
AT1G63810			unknown protein		Lus10026014 [exp]	1.0	0.9750
AT2G18900			Transducin/WD40 repeat-like su...		Lus10003637 [exp]	1.7	0.9644
AT4G26600			S-adenosyl-L-methionine-depend...		Lus10023095 [exp]	2.0	0.9625
AT1G10490			Domain of unknown function (DU...		Lus10006807 [exp]	2.0	0.9666
AT2G18220			Noc2p family (.1)		Lus10027010 [exp]	2.2	0.9612
AT4G07410		PCN	POPCORN, Transducin family pro...		Lus10024128 [exp]	3.5	0.9584
AT4G19610			nucleotide binding;nucleic aci...		Lus10018277 [exp]	3.9	0.9355
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Lus10040493 [exp]	4.6	0.9500
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Lus10022945 [exp]	8.2	0.9320
AT1G06720			P-loop containing nucleoside t...		Lus10007980 [exp]	8.9	0.9350

Compare expression of checked genes

Lus10016216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.