Plant FIBer expression Database

Lus10016217 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G03220 259 / 1e-89 Mediator complex, subunit Med7 (.1)
AT5G03500 254 / 5e-88 Mediator complex, subunit Med7 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029326
[exp]
304 / 2e-107 AT5G03500 267 / 7e-93 Mediator complex, subunit Med7 (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G062800
[exp]
276 / 2e-96 AT5G03220 249 / 5e-86 Mediator complex, subunit Med7 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05983 Med7 MED7 protein
Representative CDS sequence
>Lus10016217 pacid=23142640 polypeptide=Lus10016217 locus=Lus10016217.g ID=Lus10016217.BGIv1.0 annot-version=v1.0
ATGGCGACAGCTACATATCCACCTCCTCCGCCGTATTACAGACTGTACAAAGATTACTTGCAGAATCCCAAATCCGCGCCTGAGCCTCCTCCTCCAGTTG
AAGGAACGTACGTCTGCTATGGAGGCAATTACACTACTGATGATGTTCTTCCAAGCTTGGAAGATCAGGGAGTGCGTCAGCTGTACCCTAAGGGACCTAA
TGTTGATTTCAAGAAGGAACTGAGATCACTAAACAGAGAATTGCAGCTGCACATTTTAGAGCTTGCTGATGTTCTTGTCGAGAGACCATCACAGTACGCT
CGGAGAGTGGAAGACATATCCCTTATCTTTAAGAATTTGCACCACCTTCTTAATTCATTGCGGCCCCATCAGGCTAGAGCCACGTTAATTCACATTCTGG
AGCTTCAGATTGAACGACGCAAACAAGCTGTGGAGGATATTAAAAGGAGGAGAGAAGAAGCACAGAAGCTTCTCAGGGAAGCTGTTGAATCATTAGATGG
ACAGTAG
AA sequence
>Lus10016217 pacid=23142640 polypeptide=Lus10016217 locus=Lus10016217.g ID=Lus10016217.BGIv1.0 annot-version=v1.0
MATATYPPPPPYYRLYKDYLQNPKSAPEPPPPVEGTYVCYGGNYTTDDVLPSLEDQGVRQLYPKGPNVDFKKELRSLNRELQLHILELADVLVERPSQYA
RRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIERRKQAVEDIKRRREEAQKLLREAVESLDGQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G03500 Mediator complex, subunit Med7... Lus10016217
[exp]
0 1
AT1G21320 nucleotide binding;nucleic aci... Lus10028599
[exp]
7.1 0.7441
AT3G50620 P-loop containing nucleoside t... Lus10009348
[exp]
9.7 0.8169
AT1G58100 TCP TCP8 TCP domain protein 8, TCP fami... Lus10019949
[exp]
10.6 0.7797
AT1G50660 unknown protein Lus10043111
[exp]
10.7 0.7896
AT1G25580 NAC ANAC008, SOG1 SUPPRESSOR OF GAMMA RADIATION ... Lus10021708
[exp]
16.1 0.7666
AT3G07170 Sterile alpha motif (SAM) doma... Lus10022780
[exp]
20.5 0.7943
AT1G62520 unknown protein Lus10032250
[exp]
26.0 0.6817
AT3G13960 GRF ATGRF5 growth-regulating factor 5 (.1... Lus10000468
[exp]
27.7 0.7698
AT4G34880 Amidase family protein (.1) Lus10002804
[exp]
34.7 0.7870
AT5G20510 Alfin AL5 alfin-like 5 (.1) Lus10015637
[exp]
38.0 0.7645

Lus10016217 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.