Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11950 487 / 1e-167 ATHST TRAF-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029325 [exp] 891 / 0 AT3G11950 483 / 9e-164 TRAF-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G062900 [exp] 488 / 1e-170 AT3G11950 485 / 4e-169 TRAF-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0389 [flax] [poplar] TRAF PF02176 [flax] [poplar] zf-TRAF TRAF-type zinc finger
Representative CDS sequence Show only first row Show all	>Lus10016218 pacid=23142725 polypeptide=Lus10016218 locus=Lus10016218.g ID=Lus10016218.BGIv1.0 annot-version=v1.0 ATGTCAGCAACAGAGAAAATCGATCCTCCATTGACAGACGTGGAGCTCGTACCGGAGAAAGAAACTATCGAAGACGTGAAAGAGCCAGCACCCGCATTCC CATGTCAGCTTGCAGACATCGAGCTAGTGTACAAGATAGCTCAATCCTTTCTACCAGGGTTAGCCACAGCTTGTGTCGACAACACGACCGGGGGCATCTT TCGAACCCCCGGATCAGTAGCAGCTGACCTGAGAACCGAAATGATCGACTATCTCACGCAGAGAAGCGAAACCTTCGTTGCTGAATCCATTATTCTAGTT GGCGATGATCCACAGACGGATACCCCTACCCATCCTTTCGACATAGTGTCTGATTTCGTTGATGATTTTGCAAGCACGAAGAGGAACTTCTTCAGCCGGG TCTCCGGGTGGCTACTGAGCGAAAAGAGGGAGGACAAGATCGACGATTTCGTGCAGGACATGGAGCTGAACGGGTTCTGGCTGGTCGACAAGAGATCGAC CGTTGCGGAAGCTTTGCTAAAAAATGTCGACTTGAAGACCAGGTTCCACTGTGACCAGAAATTCAACACGGAAGAGGAGCTAGCGGAACACGTTGGAGTT TGCCCGTTTCGGTCTTTGAACTGTAACAACGAAGGGTGCGACGTTACGTTCTCTGCTAAGAACATGGATGACCATGACTCGATTTGTCCGTTCAAGATCA TTCCGTGCGAGCAGAATTGCTCGGAGCATATAATGAGACGCGACATGGACAGGCATTGCATTACCGTGTGCAAAATGAAGCTTGTAGCTTGTCCCTTTTA TGCAGTTGGTTGCGAGGCGAACGTGCCTAACAGCATGATGGATCAGCATCGTACCGACGAAGTTGGGTCCCACGTGTTGTCGACTCTTATCAGTATCCAC AAGGAAGCTTCTGTCGAGGATCTAAAGCCTCGTGCCGCCCAAGTGCTCGAGTTGTCTTCTGGGCTGTCGGAAGCGAGAGATGTTAGATCGTTGACTCGCA GAATCAAGAATGTCGAAGCGAAGTTGGGACCGTTGGAGATTAAGCCTCGTCAGAAGGACGAAGCTGACTCGCCTATGAAGACTTCGGAGAAGGCTGCTGA GACTGACAACACAGCTAGTGAAGATAAGGCTACAGCAGAGGTCAGCAAAGAGATTACCAGAGCTGTAGAGAATCTTCAGAAGGAATCTAATGAGACTGCT AATAAGGTTACCGGAGATTCGTCTGAAGCTGTAAAGCCTGTTGAAAAGGAATCTAATGAGCCTGCTACAAACAAGGTTAGCGAAGAATCAACCGAGGCTG CAAAGTCTGTCGAAAAGGAATCTAATGAATCAGGTCACAACCTCGTAAAGGAAGTAACAGAAGCTGAATTAACCGTCATCAAAGAACCAGCCGAGGTTTC GAATAACCTTGGCAAGGAATCAACTGAATCTACAGACAAACACGGCGAGGGCACCAAGGTTGCAGAGAAGAATCTTGCTGCAGAATCATTAGAAACAGCA GACGGAACCAACAAATCGGCCAATGCAATTCGGAACCTCAACAAGGAGCTAACAGAAACTACTGAAATGGCTATTCAAGAACCAGCTGAGAAGCTGAATT AA
AA sequence Show only first row Show all	>Lus10016218 pacid=23142725 polypeptide=Lus10016218 locus=Lus10016218.g ID=Lus10016218.BGIv1.0 annot-version=v1.0 MSATEKIDPPLTDVELVPEKETIEDVKEPAPAFPCQLADIELVYKIAQSFLPGLATACVDNTTGGIFRTPGSVAADLRTEMIDYLTQRSETFVAESIILV GDDPQTDTPTHPFDIVSDFVDDFASTKRNFFSRVSGWLLSEKREDKIDDFVQDMELNGFWLVDKRSTVAEALLKNVDLKTRFHCDQKFNTEEELAEHVGV CPFRSLNCNNEGCDVTFSAKNMDDHDSICPFKIIPCEQNCSEHIMRRDMDRHCITVCKMKLVACPFYAVGCEANVPNSMMDQHRTDEVGSHVLSTLISIH KEASVEDLKPRAAQVLELSSGLSEARDVRSLTRRIKNVEAKLGPLEIKPRQKDEADSPMKTSEKAAETDNTASEDKATAEVSKEITRAVENLQKESNETA NKVTGDSSEAVKPVEKESNEPATNKVSEESTEAAKSVEKESNESGHNLVKEVTEAELTVIKEPAEVSNNLGKESTESTDKHGEGTKVAEKNLAAESLETA DGTNKSANAIRNLNKELTETTEMAIQEPAEKLN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11950		ATHST	TRAF-like superfamily protein ...		Lus10016218 [exp]	0	1
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10040465 [exp]	2.4	0.9417
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10037524 [exp]	4.2	0.9332
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Lus10003407 [exp]	5.3	0.9325
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10037525 [exp]	6.3	0.9373
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10038111 [exp]	8.5	0.9127
AT2G22125		POM2, CSI1	POM-POM 2, cellulose synthase-...		Lus10019679 [exp]	9.7	0.9313
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10015105 [exp]	12.0	0.9177
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10003525 [exp]	13.0	0.8975
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Lus10037888 [exp]	14.0	0.8994
AT2G21390			Coatomer, alpha subunit (.1)		Lus10037538 [exp]	14.5	0.9240

Compare expression of checked genes

Lus10016218 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.