Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58480 509 / 2e-175 calmodulin-binding family protein (.1) AT3G13600 466 / 3e-158 calmodulin-binding family protein (.1) AT2G26190 358 / 2e-117 calmodulin-binding family protein (.1) AT4G33050 350 / 1e-114 EDA39 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) AT5G57010 332 / 1e-107 calmodulin-binding family protein (.1) AT3G52870 314 / 4e-101 IQ calmodulin-binding motif family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029324 [exp] 715 / 0 AT3G58480 472 / 6e-163 calmodulin-binding family protein (.1) Lus10016052 [exp] 399 / 7e-133 AT3G13600 582 / 0.0 calmodulin-binding family protein (.1) Lus10025173 [exp] 399 / 7e-133 AT3G13600 575 / 0.0 calmodulin-binding family protein (.1) Lus10039178 [exp] 401 / 8e-133 AT3G13600 697 / 0.0 calmodulin-binding family protein (.1) Lus10013759 [exp] 394 / 9e-130 AT3G58480 690 / 0.0 calmodulin-binding family protein (.1) Lus10013526 [exp] 358 / 9e-117 AT5G57010 581 / 0.0 calmodulin-binding family protein (.1) Lus10014872 [exp] 355 / 2e-115 AT4G33050 577 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Lus10003257 [exp] 333 / 2e-108 AT3G52870 576 / 0.0 IQ calmodulin-binding motif family protein (.1) Lus10035595 [exp] 332 / 1e-107 AT3G52870 575 / 0.0 IQ calmodulin-binding motif family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G197500 [exp] 539 / 0 AT3G58480 588 / 0.0 calmodulin-binding family protein (.1) Potri.016G063000 [exp] 530 / 0 AT3G58480 587 / 0.0 calmodulin-binding family protein (.1) Potri.003G218800 [exp] 483 / 3e-164 AT3G13600 734 / 0.0 calmodulin-binding family protein (.1) Potri.001G006200 [exp] 410 / 2e-136 AT3G13600 697 / 0.0 calmodulin-binding family protein (.1) Potri.018G061901 [exp] 386 / 9e-128 AT4G33050 601 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.001G005600 [exp] 369 / 1e-123 AT3G13600 431 / 4e-148 calmodulin-binding family protein (.1) Potri.006G226400 [exp] 366 / 4e-120 AT4G33050 598 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.006G147900 [exp] 366 / 5e-120 AT2G26190 513 / 2e-178 calmodulin-binding family protein (.1) Potri.006G114700 [exp] 327 / 7e-106 AT3G52870 561 / 0.0 IQ calmodulin-binding motif family protein (.1) Potri.006G226500 [exp] 288 / 2e-92 AT4G33050 433 / 9e-151 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016219 pacid=23142686 polypeptide=Lus10016219 locus=Lus10016219.g ID=Lus10016219.BGIv1.0 annot-version=v1.0 ATGGAATGCAAAGAAATGGAAACCGAGGATTCTTGTACTAGTAGTAGTATATCGGACGCAATACAAGAATCAGATCATGATCATCGGAGTAGCTTGTCAC ACGAGCAATTCCTGATGCGGCGGTCGCGACGGCGGCCAGAGACCACAAGGTATCATCAACATCATCATCATCATGCAGCAACAAGGTTGCAGAAGGTGTA CAAGAGTTTCAGGACCAGGAGGCAGCTCGCTGATTGCGCTGTTCTTGCCGAACAGAGATGGTGGAAGGTATTGGATTTTGCCGAGCTGAAGAGAAGCTCG ATATCTTTCTTCGACATCCACCATTCAGAGAGCGCTGCTTCGAGGTGGTCCAGAGCCAGAACGAAAGCGGCCAAGGTGGGGAAAGGTTTGTCAAAGGATG AAAAGGCTAGGAAGCTAGCTCTGCAACATTGGCTCGAGGCAATCGATCCACGGCATCGCTACGGTCATAATCTTCAATTCTACTATGTGACATGGCTTCG CTGTGAGAGCAGGCAACCATTCTTTTTTTGGCTTGATATTGGAGGAGGGAGAGAAGTGAACATCGACAGATGCCCTAGATCAAAGCTCTACCAGCAGTGC ATTAAGTATCTCGGCCCGGTTGAAAGGCTGGCTTATGAAGTGGTAATAAATGATGCTAAGTTTGTGCACAAGGAAACAGAAGAACTCCTTGACACAACCA AAGGGCCAAAAGATGCTAAGTGGATATTTGTTCTCAGCACATCAAAGACTTTGTATGTGGGACAGAAAAACAAAGGTACATTCCAGCATTCAAGCTTTTT GGCAGGTGGTGCAACACTCTCCGCCGGAAGATTGGTCGTCGAACAAGGTGTTCTAAAGGCAATTTGGCCTCACAGTGGACATTACCTTCCAACAGAAGAG AACTTTCAAGAGTTCATATCATTCCTCATGGAGCATAATGTTGATCTCATTGATGTCAAGAAAAGTCCAACTGAGGAGGAAGAGGAAAGCAGCAACGATC AAGGCAGAACATCAGCAATCACTGACGACGAAAGCTCGATCCACGGGAAGAAGAACAATAACGAAAACAGAGAGTACCGTCCAAAGCTAGCCAACAGAAT CGGCTGGAAGATGAGCAAGCTCGCCATACCAAACAGAGAAGAGATCGTGTGCGACATTTTCAAACCAGAGCTACAGAATCTCAACAATCCTTCTACTCCT ACGGATGCAGAATCCCAAAACGCCGACGACGAAGAAGAAGAAGAAGACGACGAAGGATACGAGACGGCAGAGGACTCGTTCCTGACAGAGGAAGACTTCA TGGTCCCGAAGATCACATCACTAGATGAGGAGGATGAGGAAGACCAAGGAGAAGAAACGGCGGAAGAGCGGCGGCCGGTTGTAGTGCCCAAGGAGAATAT TATGGTGAGGATCAATTCGCATAAGGGGATGAACACGTATCAGCTGGCGAATCAGCTTTCGTCCAAGTGGACGACGGGGGCTGGGCCAAGGATCGGGTGT ATGAGGGATTATCCGATTGAGATTCAATTTAGGGTTTTGGAGCATGCTCAATTGTCGCCGAGAGCGACGAAGAGGCGTTATCCACTTAGGCCCTTGGCGC CCAGGTTTAGTGGTAATGGAGATGGAGGAGGAGGAGGAGTTGTGCAGACGCCGACTGCGGCGTCGGCGGTGTCACGGCCTATTTTGCATCGGAGAGCGGA GACTGCTATGCCGGCGAAGATTTCGGTTGGGTTGGATCAAATTGAGACGTCTGCTGACTGA
AA sequence Show only first row Show all	>Lus10016219 pacid=23142686 polypeptide=Lus10016219 locus=Lus10016219.g ID=Lus10016219.BGIv1.0 annot-version=v1.0 MECKEMETEDSCTSSSISDAIQESDHDHRSSLSHEQFLMRRSRRRPETTRYHQHHHHHAATRLQKVYKSFRTRRQLADCAVLAEQRWWKVLDFAELKRSS ISFFDIHHSESAASRWSRARTKAAKVGKGLSKDEKARKLALQHWLEAIDPRHRYGHNLQFYYVTWLRCESRQPFFFWLDIGGGREVNIDRCPRSKLYQQC IKYLGPVERLAYEVVINDAKFVHKETEELLDTTKGPKDAKWIFVLSTSKTLYVGQKNKGTFQHSSFLAGGATLSAGRLVVEQGVLKAIWPHSGHYLPTEE NFQEFISFLMEHNVDLIDVKKSPTEEEEESSNDQGRTSAITDDESSIHGKKNNNENREYRPKLANRIGWKMSKLAIPNREEIVCDIFKPELQNLNNPSTP TDAESQNADDEEEEEDDEGYETAEDSFLTEEDFMVPKITSLDEEDEEDQGEETAEERRPVVVPKENIMVRINSHKGMNTYQLANQLSSKWTTGAGPRIGC MRDYPIEIQFRVLEHAQLSPRATKRRYPLRPLAPRFSGNGDGGGGGVVQTPTAASAVSRPILHRRAETAMPAKISVGLDQIETSAD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58480			calmodulin-binding family prot...		Lus10016219 [exp]	0	1
AT5G41010		NRPE12, NRPD12,...	DNA directed RNA polymerase, 7...		Lus10030353 [exp]	1.0	0.8487
AT5G02260		ATHEXPALPHA1.10...	expansin A9 (.1)		Lus10033801 [exp]	1.4	0.8445
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Lus10013477 [exp]	1.7	0.8308
AT1G30320			Remorin family protein (.1)		Lus10038522 [exp]	4.9	0.7598
AT1G13790		FDM4	factor of DNA methylation 4, X...		Lus10032933 [exp]	6.7	0.8049
AT3G56720			unknown protein		Lus10027280 [exp]	7.1	0.7514
AT4G34460		ELK4, AGB1, ATA...	ERECTA-LIKE 4, GTP binding pro...		Lus10040464 [exp]	7.9	0.7929
AT4G00850		GIF3	GRF1-interacting factor 3 (.1)		Lus10032892 [exp]	8.7	0.8127
AT5G19090			Heavy metal transport/detoxifi...		Lus10031514 [exp]	10.6	0.7849
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10014885 [exp]	13.3	0.7526

Compare expression of checked genes

Lus10016219 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.