Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39570 54 / 7e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010622 [exp] 95 / 3e-23 ND 39 / 4e-04 Lus10004128 [exp] 62 / 6e-10 AT2G32910 219 / 3e-60 DCD (Development and Cell Death) domain protein (.1) Lus10017294 [exp] 56 / 9e-09 ND 39 / 0.001 Lus10029322 [exp] 55 / 1e-07 AT5G39570 144 / 2e-40 unknown protein Lus10018873 [exp] 45 / 5e-05 ND 37 / 0.010
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G127400 [exp] 102 / 8e-24 AT5G39570 139 / 4e-37 unknown protein Potri.017G087200 [exp] 87 / 2e-18 AT5G39570 112 / 3e-27 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016220 pacid=23142682 polypeptide=Lus10016220 locus=Lus10016220.g ID=Lus10016220.BGIv1.0 annot-version=v1.0 ATGGCGACGACGCTCTCAACTCCGAGTACAGCAGCTATTCCCGCCCCAAGCCTCGTCCTTGCCCCCCCTACCCCCGCCTACGGCTTCCAGCCCGGTGGCG CCTCTGGCGGCGGTGGAAATGGCGGGAGAACCGAGACTGAGTACGGATCTGGCTATGGCCGGAAGCAGGAACCTGAATCTGAGTATGGATCTGGATATGT CCGGAAGCAAGAATCTGAATCCGAGTACGGATCTGGATATGGCCGAAAGCAGGAAACTGAACCCGAGTACGGATCTGGCTACGGTCGGAAGCAAGAATCT GAATCCGAGTACGGATCTGGATATGGCCGAAAGCAGGAAACTGAATCCGAGTACGGATCTGGCTACGGTCGGAAGCAGGAATCTGAATCCGAGTATGGAT CTGGATATGGCCGAAAGCAGGAAACTGAATCCGAGTACGGATCTGGATATGGCCGAAAGCAGGAAACTGAACCCGAGTACGGATCTGGCTACGGTCGGAA GCAAGAATCTGAATCCGAGTACGGATCTGGATATGGCCGAAAGCAGGAAACTGAACCCGAGTACGGATCTGGCTACGGTCGGAAGCAAGAATCTGAATCC GAGTACGGATCTGGATATGGCCGAAAGCAGGAAACTGAATCCGAGTACGGATCTGGCTACGGTCGGAAGCAGGAATCTGAATCCGAGTATGGATCTGGAT ATGGCCGGAGGCAGGAGCCGGAATCTGAGTACGGATCTGGTTACGGTCGTAGGCAGGAATCCGAGTACGGATCGGAAGAATACGGCCGAAAACCGGCAGA GCCTGAATACGGATCCGGTTATGGCCGTAACCAGGAGTCCCAGTATGGCCGCAGGACTGAAACGGAATATGAAGGTGGAGGCAATGAGTACGGGAGGAGA AAGCAGGGATATGGAGAGGAGGAAGGTGCAGGAGGTTACGGAAGGCGTCAGGAGGAGACAACTGAGTATGGCTCCGGTGGTGGTTATCGGAGGAGCGAAG AGGTCTACGAGAAGCCTTCTCATGGTAGGCGCAAGGATGATGACGAGGACAATGAGGAGTCTTCTCGCAGCAAGTATGGTCATGGTGGTGATGATGAAGA AGGCTATGGCCGCAAAAAATACGGGGATGGCGACTCTGATGAGGAAGATGAGGAGAAGAAGAAGCACCGTTACAAGCATCAGCACCACCGTCGCAATGAC GATGATGAATGA
AA sequence Show only first row Show all	>Lus10016220 pacid=23142682 polypeptide=Lus10016220 locus=Lus10016220.g ID=Lus10016220.BGIv1.0 annot-version=v1.0 MATTLSTPSTAAIPAPSLVLAPPTPAYGFQPGGASGGGGNGGRTETEYGSGYGRKQEPESEYGSGYVRKQESESEYGSGYGRKQETEPEYGSGYGRKQES ESEYGSGYGRKQETESEYGSGYGRKQESESEYGSGYGRKQETESEYGSGYGRKQETEPEYGSGYGRKQESESEYGSGYGRKQETEPEYGSGYGRKQESES EYGSGYGRKQETESEYGSGYGRKQESESEYGSGYGRRQEPESEYGSGYGRRQESEYGSEEYGRKPAEPEYGSGYGRNQESQYGRRTETEYEGGGNEYGRR KQGYGEEEGAGGYGRRQEETTEYGSGGGYRRSEEVYEKPSHGRRKDDDEDNEESSRSKYGHGGDDEEGYGRKKYGDGDSDEEDEEKKKHRYKHQHHRRND DDE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39570			unknown protein		Lus10016220 [exp]	0	1
AT4G22580			Exostosin family protein (.1)		Lus10004341 [exp]	1.4	0.9625
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10021160 [exp]	3.9	0.9535
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10040527 [exp]	4.2	0.9553
AT5G17190			unknown protein		Lus10005110 [exp]	5.2	0.8991
AT5G57460			unknown protein		Lus10000167 [exp]	5.3	0.9337
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10040528 [exp]	5.7	0.9524
AT1G03350			BSD domain-containing protein ...		Lus10029636 [exp]	6.5	0.9081
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10021159 [exp]	7.1	0.9512
AT4G29680			Alkaline-phosphatase-like fami...		Lus10032681 [exp]	7.3	0.9226
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10021567 [exp]	7.5	0.9241

Compare expression of checked genes

Lus10016220 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.