Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08040 136 / 6e-39 ATFRD3, MAN1, FRD3 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) AT1G51340 128 / 5e-36 MATE efflux family protein (.1.2) AT4G38380 71 / 3e-15 MATE efflux family protein (.1) AT2G38330 59 / 4e-11 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016412 [exp] 188 / 4e-58 AT1G51340 569 / 0.0 MATE efflux family protein (.1.2) Lus10039609 [exp] 168 / 8e-51 AT3G08040 619 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Lus10029517 [exp] 167 / 8e-50 AT3G08040 596 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Lus10027367 [exp] 118 / 5e-32 AT1G51340 664 / 0.0 MATE efflux family protein (.1.2) Lus10042365 [exp] 106 / 8e-28 AT1G51340 571 / 0.0 MATE efflux family protein (.1.2) Lus10026303 [exp] 106 / 1e-27 AT1G51340 564 / 0.0 MATE efflux family protein (.1.2) Lus10002856 [exp] 69 / 2e-14 AT2G38330 477 / 2e-165 MATE efflux family protein (.1) Lus10012227 [exp] 66 / 1e-13 AT2G38330 608 / 0.0 MATE efflux family protein (.1) Lus10023943 [exp] 59 / 4e-11 AT4G38380 593 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G266900 [exp] 158 / 5e-47 AT3G08040 598 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.009G061100 [exp] 158 / 7e-47 AT3G08040 566 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.016G053600 [exp] 129 / 3e-36 AT1G51340 543 / 0.0 MATE efflux family protein (.1.2) Potri.009G053700 [exp] 120 / 7e-33 AT1G51340 634 / 0.0 MATE efflux family protein (.1.2) Potri.016G126000 [exp] 79 / 4e-18 AT2G38330 499 / 9e-173 MATE efflux family protein (.1) Potri.009G143400 [exp] 68 / 2e-14 AT4G38380 626 / 0.0 MATE efflux family protein (.1) Potri.004G183600 [exp] 68 / 3e-14 AT4G38380 604 / 0.0 MATE efflux family protein (.1) Potri.005G102800 [exp] 66 / 2e-13 AT4G38380 547 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10016228 pacid=23142652 polypeptide=Lus10016228 locus=Lus10016228.g ID=Lus10016228.BGIv1.0 annot-version=v1.0 ATGGCAACAACAATTTGTGTAACATTCGCTGCATCAAGGGCTACAAGGCTTGGATCAACCACAATGGCTGCCTTCCAGATATGCTTGCAAGTCTGGTTGA CATCTTCCCTTCTTTCTGATGGCTTGGCAGTTGCTGGCCAGGCTATCATAGCTACTGCGTTTGCGGAGAAGGATTACGACAAGGCAACAAAGGCTGCAAG CAGGGTCTTGCAAATGAGTGTGGTTGCTGGGTTGGTTCTGGCCGGAGTGGTTGGAGCTGGTTTGCACTTTGGAGACACCGTTTTCTCCAAAGATCCTAAT GTTCTTCACTTTATAACCATAGGCATCCCGGTACGTAACCATTTTCTGTCGTGTGGTTTTGATTTCGAGATTTGA
AA sequence Show only first row Show all	>Lus10016228 pacid=23142652 polypeptide=Lus10016228 locus=Lus10016228.g ID=Lus10016228.BGIv1.0 annot-version=v1.0 MATTICVTFAASRATRLGSTTMAAFQICLQVWLTSSLLSDGLAVAGQAIIATAFAEKDYDKATKAASRVLQMSVVAGLVLAGVVGAGLHFGDTVFSKDPN VLHFITIGIPVRNHFLSCGFDFEI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Lus10016228 [exp]	0	1
AT1G51340			MATE efflux family protein (.1...		Lus10016412 [exp]	1.4	0.9072
AT5G43540	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10021881 [exp]	2.0	0.8121
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10005661 [exp]	2.4	0.8596
					Lus10008498 [exp]	3.0	0.8596
					Lus10016963 [exp]	5.9	0.7688
					Lus10016158 [exp]	8.0	0.7665
AT5G38200			Class I glutamine amidotransfe...		Lus10009152 [exp]	10.7	0.7983
AT3G06880			Transducin/WD40 repeat-like su...		Lus10023666 [exp]	19.0	0.7471
					Lus10042473 [exp]	19.0	0.7174
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10004511 [exp]	20.3	0.6856

Compare expression of checked genes

Lus10016228 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.