Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20710 269 / 1e-85 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G21705 226 / 3e-69 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02150 226 / 7e-69 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G60770 209 / 1e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02820 199 / 2e-58 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G02370 196 / 2e-57 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G01990 189 / 5e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G28020 187 / 1e-53 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G27460 160 / 2e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09450 150 / 4e-41 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029313 [exp] 316 / 2e-105 AT2G20710 127 / 2e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10033698 [exp] 238 / 2e-73 AT2G20710 349 / 4e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10018588 [exp] 237 / 2e-73 AT2G20710 303 / 2e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10003590 [exp] 227 / 3e-69 AT4G21705 434 / 2e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001213 [exp] 219 / 2e-66 AT4G21705 500 / 2e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005855 [exp] 215 / 5e-65 AT4G21705 503 / 5e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013047 [exp] 215 / 7e-65 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021053 [exp] 214 / 3e-64 AT1G02370 494 / 3e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002062 [exp] 197 / 3e-62 AT2G20710 74 / 4e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G063400 [exp] 313 / 2e-102 AT2G20710 349 / 3e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G063300 [exp] 302 / 2e-98 AT2G20710 345 / 1e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G132700 [exp] 282 / 8e-91 AT2G20710 387 / 2e-130 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G133000 [exp] 271 / 6e-87 AT2G20710 310 / 1e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G132500 [exp] 269 / 7e-86 AT2G20710 388 / 4e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.011G120900 [exp] 262 / 7e-83 AT4G21705 483 / 8e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G051500 [exp] 239 / 3e-74 AT4G21705 605 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G042500 [exp] 234 / 2e-72 AT4G21705 608 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G050300 [exp] 235 / 5e-72 AT1G02150 698 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G139400 [exp] 226 / 1e-68 AT1G02150 714 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10016229 pacid=23142706 polypeptide=Lus10016229 locus=Lus10016229.g ID=Lus10016229.BGIv1.0 annot-version=v1.0 ATGAGTCTCTCTCGATTCCTCCTCAGACTCACTTCCATCGTCTCTCCGTCCTCCGCCGTCGGCCGTTTCGTTTCACACTTCCATTCAAATGTTCCTTACA GCTCCGCTACATCAGCAGCAGCGAGTCCCTCTTCGAACCGGAACTTCAGCAGTCCGACCAACGAATCCGGAAATGAGCTATACCGGCGAATTTCGCCGGT CGGGGATCCCAAGGTCTCCATCGTTCCGATCCTCGATCGTTGGATTGAAGAAGGAAAGTCCGTCGAGAAGCACCAGCTCGTTTCCTATATCAAAGAGTTA CGCTACTTCGGCCGTCATTATCACGCCCTTGAGATCTCCAAGTGGATGACAGACAAAAGGTACTTGGAACTAACTTCACGAGATGCTGCAATAAGGCTGG ACTTGATAGCTAAGGTTCAAGGGATAAAACCAGCAGCCAACTACTTCGAAACTCTCCCTCAGCAGCTTAAAGGGGTCAATACTTACGGCTCACTTCTCAA CTGCTACTGTCGCGTCCAGTCCGTGGAGAAGGCAGAGGTGGTAATGCAAGAGATGAGGGACTTAGGGATCAACAAGACTAGCCTCCATTACAATACTTTG CTCACTCTTTACCATCGAATTGGGGACACAAAGAAGTTTGACGATCTTATCAAGGTAATGGACGACTGCGGCATTCCATACAATGTCATAACGTATAACA TACTGGTTTCTTCATATGGAGCTGCTTGCGATGTTAAAGGGATGGAAAGAACTCTGATAAGGATGGAATCCGACCCGGGTGTCACCCCGGACTGGGCCAT ATACAACACTGCCGCAACAAATTACAGAAAGGCCGAACTTTTTGACAAGGGTGTGAAAATGTTGAAGAAAGCCGAAGGACTTATCAGAAAGAAGAAAGAT ATCAAAGCATACTATTACCTCCTCACAAGCTACGCAGCCATGGGGAAGAAAGATGAAGTCTTTGCAGTTTGGGAACGTCTCAAGAAGAGCGGGAAGAAGG TCCTCAACAAAGGGTACAGGGACGTGATATCTTCCCTCGCGAAGCTGGGCGATTTCGAGGCTGCTGAGAAGATACTCGACGAGTGGGAGTCTCGAAAGAG CCCTGGTTACGATGTCCGTGTCCCTAACGTCCTCGTCAGCGCCAACATGAAACTCGGCCGCTGGGAGCAGGCCTCGGCGCCTACATGA
AA sequence Show only first row Show all	>Lus10016229 pacid=23142706 polypeptide=Lus10016229 locus=Lus10016229.g ID=Lus10016229.BGIv1.0 annot-version=v1.0 MSLSRFLLRLTSIVSPSSAVGRFVSHFHSNVPYSSATSAAASPSSNRNFSSPTNESGNELYRRISPVGDPKVSIVPILDRWIEEGKSVEKHQLVSYIKEL RYFGRHYHALEISKWMTDKRYLELTSRDAAIRLDLIAKVQGIKPAANYFETLPQQLKGVNTYGSLLNCYCRVQSVEKAEVVMQEMRDLGINKTSLHYNTL LTLYHRIGDTKKFDDLIKVMDDCGIPYNVITYNILVSSYGAACDVKGMERTLIRMESDPGVTPDWAIYNTAATNYRKAELFDKGVKMLKKAEGLIRKKKD IKAYYYLLTSYAAMGKKDEVFAVWERLKKSGKKVLNKGYRDVISSLAKLGDFEAAEKILDEWESRKSPGYDVRVPNVLVSANMKLGRWEQASAPT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10016229 [exp]	0	1
					Lus10030678 [exp]	2.6	0.7759
					Lus10007187 [exp]	4.0	0.7711
AT1G05660			Pectin lyase-like superfamily ...		Lus10010584 [exp]	4.9	0.7244
AT1G11340			S-locus lectin protein kinase ...		Lus10002717 [exp]	5.2	0.7370
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Lus10005917 [exp]	8.5	0.6508
					Lus10001550 [exp]	9.7	0.7144
AT5G45840			Leucine-rich repeat protein ki...		Lus10029228 [exp]	14.0	0.6746
AT1G53000		AtCKS, KDSB	CMP-KDO synthetase, Nucleotide...		Lus10040889 [exp]	22.4	0.6498
					Lus10032314 [exp]	22.7	0.6472
AT5G51030			NAD(P)-binding Rossmann-fold s...		Lus10032524 [exp]	26.5	0.6365

Compare expression of checked genes

Lus10016229 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.