Plant FIBer expression Database

Lus10016230 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G58470 203 / 6e-66 nucleic acid binding;methyltransferases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000248
[exp]
341 / 2e-120 AT3G58470 288 / 8e-99 nucleic acid binding;methyltransferases (.1)
Lus10005597
[exp]
274 / 3e-94 AT3G58470 230 / 3e-76 nucleic acid binding;methyltransferases (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G063600
[exp]
211 / 4e-69 AT3G58470 282 / 2e-96 nucleic acid binding;methyltransferases (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF10237 N6-adenineMlase Probable N6-adenine methyltransferase
Representative CDS sequence
>Lus10016230 pacid=23142738 polypeptide=Lus10016230 locus=Lus10016230.g ID=Lus10016230.BGIv1.0 annot-version=v1.0
ATGGAAGAGCAACAGACGTTAGGACATGAGGGCGCCTCCGCCGGCGAAGAAGACGAAGCGCCGACGCTGAGCTTGCGCGCCATCGTAGCTCTTCAACAGT
TCCTAGCGGAGCAGAAACGTTCCGAAGAAGCAGAAGAAACAAACGGGGAGACTTCTGTGGAGCTGGTCTCAGAAGATTGGAGGCTGAGCCAGTTCTGGTA
CGAGAAGTCAACTGCCGAGACTGTAGCTAAAGAAGTCATTTCCCTGTGCGGCGATTCTGGCCGGGTAGCTTGCATCGCTTGCCCTACTCTCTACGCTTAT
ATCAAGAAAATTGATCCGAATCTGAGCGTTCAATTGCTGGAGTACGATGAGCGGTTCGGGAGGTACAGAGGTGATTTCACGTTTTACGATTACAACAAGC
CGGAGGAGCTTCCGGCGGAGTTGAAGCAATGTTTCAGTGTTGTGGTAGCTGATCCTCCTTATTTGAGTAAGGAGTGTTTAGAGAAGGTTGCAGAGACGGT
TTCTTTTCTTGCAAAACCTGATCCTAGCAACTCATACGTGCTTCTGCTCACAGGTAACTCTCCTAATCCGGGTTTTTCTCTGACTGTTCTTTTGTTTTTC
TCGGACTGTTCTTTTCAATCTTAA
AA sequence
>Lus10016230 pacid=23142738 polypeptide=Lus10016230 locus=Lus10016230.g ID=Lus10016230.BGIv1.0 annot-version=v1.0
MEEQQTLGHEGASAGEEDEAPTLSLRAIVALQQFLAEQKRSEEAEETNGETSVELVSEDWRLSQFWYEKSTAETVAKEVISLCGDSGRVACIACPTLYAY
IKKIDPNLSVQLLEYDERFGRYRGDFTFYDYNKPEELPAELKQCFSVVVADPPYLSKECLEKVAETVSFLAKPDPSNSYVLLLTGNSPNPGFSLTVLLFF
SDCSFQS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G58470 nucleic acid binding;methyltra... Lus10016230
[exp]
0 1
Lus10005601
[exp]
7.9 0.8909
AT1G77320 MEI1 meiosis defective 1, transcrip... Lus10028674
[exp]
13.3 0.8532
ATMG00080 ATMG00080.1, RP... ribosomal protein L16 (.1) Lus10004083
[exp]
16.0 0.8893
AT1G77800 PHD finger family protein (.1.... Lus10009785
[exp]
20.7 0.8855
Lus10007204
[exp]
24.8 0.8781
AT5G15680 ARM repeat superfamily protein... Lus10035142
[exp]
33.9 0.8770
Lus10008200
[exp]
34.5 0.8749
AT3G01460 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.... Lus10022224
[exp]
37.8 0.8768
AT5G58100 unknown protein Lus10008551
[exp]
39.9 0.8561
AT1G17450 B-block binding subunit of TFI... Lus10000374
[exp]
41.9 0.8746

Lus10016230 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.