Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65870 146 / 1e-44 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G58170 145 / 2e-44 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G49040 140 / 3e-42 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT3G13650 137 / 2e-41 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42510 137 / 2e-41 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT3G13660 134 / 1e-40 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42500 134 / 4e-40 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G55210 134 / 7e-40 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) AT1G22900 129 / 5e-38 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT3G13662 125 / 2e-36 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029312 [exp] 241 / 2e-82 AT3G13660 135 / 1e-41 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10018340 [exp] 180 / 4e-58 AT1G58170 129 / 3e-38 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10000376 [exp] 171 / 2e-55 AT5G42510 87 / 1e-22 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10029306 [exp] 149 / 8e-46 AT1G65870 208 / 5e-69 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10042488 [exp] 145 / 4e-44 AT1G58170 202 / 1e-66 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10026176 [exp] 144 / 7e-44 AT1G58170 207 / 1e-68 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10030483 [exp] 141 / 1e-42 AT1G65870 164 / 1e-51 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10021084 [exp] 130 / 4e-38 AT5G42500 164 / 2e-51 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10039561 [exp] 129 / 5e-38 AT3G13650 157 / 5e-49 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G216300 [exp] 158 / 3e-49 AT1G55210 221 / 5e-74 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.003G216400 [exp] 157 / 7e-49 AT1G58170 225 / 1e-75 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G061000 [exp] 154 / 7e-48 AT1G58170 214 / 2e-71 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216200 [exp] 154 / 9e-48 AT1G55210 239 / 2e-81 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.001G009100 [exp] 152 / 5e-47 AT1G58170 238 / 1e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G060900 [exp] 144 / 6e-44 AT1G58170 197 / 1e-64 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.006G195300 [exp] 144 / 1e-43 AT5G49040 202 / 2e-66 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G060700 [exp] 136 / 1e-40 AT1G65870 186 / 2e-60 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G060801 [exp] 133 / 6e-40 AT1G58170 164 / 5e-52 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.009G131000 [exp] 129 / 5e-38 AT2G21100 236 / 4e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0650 [flax] [poplar] AOC_barrel PF03018 [flax] [poplar] Dirigent Dirigent-like protein
Representative CDS sequence Show only first row Show all	>Lus10016231 pacid=23142658 polypeptide=Lus10016231 locus=Lus10016231.g ID=Lus10016231.BGIv1.0 annot-version=v1.0 ATGGCTCACAACCCATCTCTCCTTCTTATCATTGCCATACTCACCATCAACATCATAACAATATCTCCCTCGTCAATCAACATCGACATCAACAACTCAA CAATAAAGCAAACCCACATCAACCTCTACTGGCACAACAACGCCAACGCCACCTCCCCCAACGTCACCGACGTCCTCTCCGTCCCTCCTGCCTTGCCCAA CTCCCCCGTCGGTTTCGGGGCCATAAGCGTCTTCGACGATCCTCTCACCGCTGGTCCCAGCCCTGGCTCGCACTTGCTGGGCAGAGCTCAGGGCTCCTAC GTGTCTGCTTCTCATCAGACGTTCGGGATTATGATGGCGATGAACTTAGTGTTCATGGGCGGTAAGTTCAACGGAAGCAGCCTCGCCGTGATGGGAAGGA ATGAAGTGCCGTTGAAGGTTCGAGAGTTGCCGGTGATCGGAGGGACTGGAGTTTTCCGGCTGGCTAGGGGCTATGTTATTATGAATACGTACTTCTTTGA CCCTAAAGCTGGGCTTGCCGTGGTTGAGTATAATATCTACGTTTGGCATTATTAG
AA sequence Show only first row Show all	>Lus10016231 pacid=23142658 polypeptide=Lus10016231 locus=Lus10016231.g ID=Lus10016231.BGIv1.0 annot-version=v1.0 MAHNPSLLLIIAILTINIITISPSSINIDINNSTIKQTHINLYWHNNANATSPNVTDVLSVPPALPNSPVGFGAISVFDDPLTAGPSPGSHLLGRAQGSY VSASHQTFGIMMAMNLVFMGGKFNGSSLAVMGRNEVPLKVRELPVIGGTGVFRLARGYVIMNTYFFDPKAGLAVVEYNIYVWHY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65870			Disease resistance-responsive ...		Lus10016231 [exp]	0	1
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Lus10005537 [exp]	1.0	0.9973
					Lus10016534 [exp]	2.6	0.9918
					Lus10041871 [exp]	3.2	0.9927
					Lus10026293 [exp]	3.7	0.9949
AT3G05600			alpha/beta-Hydrolases superfam...		Lus10029878 [exp]	3.9	0.9942
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10011333 [exp]	4.5	0.9898
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10043211 [exp]	4.5	0.9942
AT5G45980	HD	WOX9B, STPL, WO...	WUSCHEL related homeobox 9B, S...		Lus10013960 [exp]	6.5	0.9923
AT1G44760			Adenine nucleotide alpha hydro...		Lus10042701 [exp]	7.3	0.9791
AT2G17950	HD	WUS1, PGA6, WUS	WUSCHEL 1, WUSCHEL, Homeodomai...		Lus10041909 [exp]	7.5	0.9916

Compare expression of checked genes

Lus10016231 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.