Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43590 119 / 1e-29 zinc knuckle (CCHC-type) family protein (.1) AT5G36240 54 / 3e-08 zinc knuckle (CCHC-type) family protein (.1) AT3G43490 51 / 4e-07 Zinc knuckle (CCHC-type) family protein (.1) AT5G52380 40 / 0.001 VASCULAR-RELATED NAC-DOMAIN 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029311 [exp] 417 / 3e-147 AT3G43590 139 / 2e-37 zinc knuckle (CCHC-type) family protein (.1) Lus10013378 [exp] 120 / 4e-30 AT3G43590 256 / 1e-74 zinc knuckle (CCHC-type) family protein (.1) Lus10008437 [exp] 119 / 9e-30 AT3G43590 264 / 4e-80 zinc knuckle (CCHC-type) family protein (.1) Lus10027475 [exp] 49 / 1e-06 AT5G52380 261 / 1e-87 VASCULAR-RELATED NAC-DOMAIN 6 (.1) Lus10039230 [exp] 49 / 2e-06 AT5G52380 261 / 2e-87 VASCULAR-RELATED NAC-DOMAIN 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G193500 [exp] 139 / 1e-36 AT3G43590 299 / 3e-93 zinc knuckle (CCHC-type) family protein (.1) Potri.009G155500 [exp] 121 / 2e-30 AT3G43590 286 / 9e-89 zinc knuckle (CCHC-type) family protein (.1) Potri.016G063800 [exp] 116 / 2e-30 AT3G43590 141 / 2e-38 zinc knuckle (CCHC-type) family protein (.1) Potri.015G144600 [exp] 44 / 5e-05 AT5G52380 261 / 2e-87 VASCULAR-RELATED NAC-DOMAIN 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0511 [flax] [poplar] Retroviral_zf PF00098 [flax] [poplar] zf-CCHC Zinc knuckle
Representative CDS sequence Show only first row Show all	>Lus10016232 pacid=23142697 polypeptide=Lus10016232 locus=Lus10016232.g ID=Lus10016232.BGIv1.0 annot-version=v1.0 ATGGAAAATCTCGGCTGTGAGATCATCGAAGGAAACGGAAGCATGAACGGAGCCGATCAGGCAAGTTGCAGCGACGGTGGAAACGAAGCTGCGATTAGAT CTGCAGAAGAAGAAGAAGATAATGATGATGAAGAAGAAGAGGAGGAGGGGGAGGAGTTGAGACTGAAGAAGCTCGGCGATCTGATTGGGCCGGAGAATCT GAAAGCATTACTGGATGCAGAAGGAGGCGGGCGAAGAAATGCTGCTTATTATCACAGTAGTCCTCCGAACTGGAGGAGGAGGAGAAGGAGAAGAAGGAAG GCTAAGGATTCGAATTCTGATAAATCTCATGATCAGCAGCAGCCTGATGACTTGCCTCTTGGAACTGCAAAAGAAGAGAAGCAACAGGAAAAGTCAAGGA ACGGAGTAAATGGAACTGGTGAAGACAATGTGGTGCCAAGGAAGCTACCTGAAACAGCAAAATACGATAAGCAAAAGGCAAAATCAAGGAATGGAGTAGT TGAAAATGGTGAAGACAATGTGGTGCTGAGGAAGCTACTTCGCAGACCAAGGTATTTCGATCCTCCAATGGACGATGGATTGGAGGAACTCTGTCCCCTT TGTGGTCAGGATGGACACGTAGCTAGGCACTGCGTGTTGCAGAAGAACCAGAAGAAACCATGCTTCCTTTGTGGCAGTTCCGAGCATGCCTGGAAACATT GCAAGAAGAGCTTGTGCAAACGAGAAGGCTACCACTCCGAGGAGAAAGACGAGTTATCCTCTGTGATCTGCTTAAATTGCAGGGAGACCGGGCACGACAT GCTGTCATGTAAGAGTGATTATGCACCTGATGATCTCAAGGGAATAGAATGCTACGTGTGCAAGAAGGATGGTCACTTGTGCTGTAGTGAGTTTCCAGAC AACAATGGCCTTCTGCTAGAGGTTACATGTTACAGTTGTGGCGAATCAGGCCACTCGGGTTCTGTAAGTCATCATGCACAATAA
AA sequence Show only first row Show all	>Lus10016232 pacid=23142697 polypeptide=Lus10016232 locus=Lus10016232.g ID=Lus10016232.BGIv1.0 annot-version=v1.0 MENLGCEIIEGNGSMNGADQASCSDGGNEAAIRSAEEEEDNDDEEEEEEGEELRLKKLGDLIGPENLKALLDAEGGGRRNAAYYHSSPPNWRRRRRRRRK AKDSNSDKSHDQQQPDDLPLGTAKEEKQQEKSRNGVNGTGEDNVVPRKLPETAKYDKQKAKSRNGVVENGEDNVVLRKLLRRPRYFDPPMDDGLEELCPL CGQDGHVARHCVLQKNQKKPCFLCGSSEHAWKHCKKSLCKREGYHSEEKDELSSVICLNCRETGHDMLSCKSDYAPDDLKGIECYVCKKDGHLCCSEFPD NNGLLLEVTCYSCGESGHSGSVSHHAQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G43590			zinc knuckle (CCHC-type) famil...		Lus10016232 [exp]	0	1
AT1G57540			unknown protein		Lus10024000 [exp]	5.7	0.7672
AT5G09220		AAP2	amino acid permease 2 (.1)		Lus10006026 [exp]	17.2	0.6820
AT2G04865			Aminotransferase-like, plant m...		Lus10006393 [exp]	23.7	0.7522
AT4G00290			Mechanosensitive ion channel p...		Lus10005121 [exp]	27.9	0.7307
AT3G10530			Transducin/WD40 repeat-like su...		Lus10032289 [exp]	29.7	0.7149
AT1G09730			Cysteine proteinases superfami...		Lus10000917 [exp]	32.4	0.7257
AT4G12020	WRKY	MEKK4, MAPKKK11...	MAPK/ERK KINASE KINASE 4, MITO...		Lus10016282 [exp]	36.2	0.7264
AT3G14640		CYP72A10	"cytochrome P450, family 72, s...		Lus10019354 [exp]	44.4	0.6925
AT5G59880		ADF3	actin depolymerizing factor 3 ...		Lus10025318 [exp]	46.1	0.6983
					Lus10027784 [exp]	46.1	0.6882

Compare expression of checked genes

Lus10016232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.