Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12020 997 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G06670 959 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G21730 694 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G39050 511 / 1e-164 Kinesin motor family protein (.1) AT2G21380 507 / 7e-163 Kinesin motor family protein (.1) AT3G10180 228 / 2e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G24170 212 / 2e-56 ATP binding microtubule motor family protein (.1) AT2G21300 207 / 3e-55 ATP binding microtubule motor family protein (.1.2) AT1G18370 207 / 7e-55 HIK, ATNACK1 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) AT3G51150 205 / 4e-54 ATP binding microtubule motor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029307 [exp] 1612 / 0 AT3G12020 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025688 [exp] 737 / 0 AT1G21730 1042 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10018145 [exp] 734 / 0 AT1G21730 1033 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017969 [exp] 516 / 9e-166 AT4G39050 1517 / 0.0 Kinesin motor family protein (.1) Lus10041958 [exp] 510 / 4e-165 AT4G39050 1202 / 0.0 Kinesin motor family protein (.1) Lus10017496 [exp] 438 / 2e-137 AT4G39050 1235 / 0.0 Kinesin motor family protein (.1) Lus10028790 [exp] 382 / 4e-115 AT4G39050 1242 / 0.0 Kinesin motor family protein (.1) Lus10005181 [exp] 228 / 5e-62 AT3G43210 1189 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Lus10010441 [exp] 229 / 2e-61 AT3G10180 1214 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G060400 [exp] 1251 / 0 AT3G12020 1281 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G194900 [exp] 1229 / 0 AT3G12020 1278 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G081300 [exp] 771 / 0 AT1G21730 1063 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G122100 [exp] 514 / 3e-165 AT4G39050 1379 / 0.0 Kinesin motor family protein (.1) Potri.004G161100 [exp] 509 / 1e-163 AT4G39050 1411 / 0.0 Kinesin motor family protein (.1) Potri.006G040700 [exp] 225 / 2e-60 AT3G10180 1336 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G027600 [exp] 220 / 2e-59 AT2G21300 722 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.006G136600 [exp] 215 / 1e-57 AT3G43210 1250 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Potri.007G014800 [exp] 215 / 2e-57 AT5G66310 868 / 0.0 ATP binding microtubule motor family protein (.1) Potri.009G124500 [exp] 213 / 6e-57 AT2G21300 752 / 0.0 ATP binding microtubule motor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10016236 pacid=23142744 polypeptide=Lus10016236 locus=Lus10016236.g ID=Lus10016236.BGIv1.0 annot-version=v1.0 ATGCTTAGTGCAGTCCATGGTTTCAATGCAGGTATCCCGTTCCTACAGAATCGTCTAAAGGGACCAAAGTGGCTTCCCTTGGTAGTTGCGTTTCCTCCAC TGCTAATGTACTCTGCTACATGTGCTACACTCGGAGGCTCCAGTAAAGCTGCGAATTCGACGCCGTCTTCCTCCACCACGACTTCTTCCTCCAAGCACTT CGTCGAGACCTCAATCGACGGCCATAGCTCCCCTGCGTCTTCCTCTGTTCGGAGTAAGCCGCCTCAGTATTTCTACTCCGAGTCTCTTCCTGTCGACGGA GGAAGATCCAAGGAGAATGTAACCGTCACAGTCCGGTTTCGTCCTCTCAGTCCAAGGGAAATTCGTCAAGGAGAGGAGGTAGCTTGGTATGCGGATGGAG AAACTCTTGTCCGGAGTGAACATAATCCGACGATTGCCTATCCTTATGATCGCGTTTTTGGCCCGACAACTACAACAAGACACGTTTACGATGTTGCGGC TCAACATGTTGTCAGCGGCACTATGGACGGTGTCAATGGCACCATTTTTGCCTACGGTGTCACAAGCAGTGGAAAGACACACACAATGCATGTTGTCAAT GATTTGTTGAATCCAGCTGGACAAAATTTAAGAATCAGAGAAGATGCTCAGGGAACCTTTGTCGAAGGAATAAAGGAAGAAGTTGTCTTATCCCCCGCAC ATGCGCTTTCCCTCATTGCAGCTGGAGAAGAGCACAGACATGTTGGTTCTACGAACTTTAATCTTCTCAGCAGCAGAAGTCATACAATTTTTACACTGAC AATAGAGAGTAGTCCATGCGGGGAAAACTGTGAAGGAGAATCTGTGAATCTCTCCCAATTGAACCTCATCGATCTGGCAGGTTCCGAGAGTTCAAAGGCT GAAACTACTGGGATGAGGCGTAAAGAAGGAGCCTACATAAATAAGAGCCTTCTAACTCTTGGGACAGTTATATCAAAATTGACAGAAGGGAGGGCAAGTC ACATACCATATAGGGATTCAAAGCTAACAAGGCTCCTTCAATCTTCATTGAGTGGTCTTGGACGTGTATCACTGATTTGCACTGTAACACCCGCATCAAG CAGCTCAGAAGAGACGCATAATACTTTGAAATTTGCTCACCGGGCAAAACACATGGAGATACAAGCAGCACAGAACAAGATTATTGACGAGAAATCACTC ATCAAGAAGTACCAAAACGAGATACGTTGTTTGAAAGAAGAGTTGGAACAACTGAAGAAGGGTATTGTAACAGTCCCCCAATTACAAAATATCAGCGAAG ACGACATCGTCCTTTTGAAGCAGAAGCTGGAAGATGGTCAAGTCAAGCTGCAGTCCAAATCCGAAGAAGATGAAGAAGCTAAAGACGCTTTAATGAGCAG GATACAGCGGTTGACTAAGTTGATTTTGGTTTCTAGTAAAGCTTCACAATCACCTAGGATTTCTCAACGGCCTATACCGAGAAGGAGACATTCATTTGGA GAAGAAGAGCTTGCATATTTACCCTACAAAAGGAGGGACTTGATACTGGACGAAGAGAACGTTGACTTTTATGTTTCCCTTGAAGGGAATCCGGAAGCTA CAGATGACACCCTTAAAGAGAAGAAAACCAAGAAGAACGGACTACTGAATTGGTTGAAATTACGGAAAAAAGATGGTCTAGGAACAAGCACAAGTGACAA ATCGAGCGGAGCAAAATCGAATAGCACCCCTTCAACGCCTCAAGCAGAAACTAGCCATTCCCATTCAGAATTGCGACACGGACATTCATTGCTCATGGAA AGCTCACCGTCAGCCGAGCTTCATTCCGACGTTAGGCAAGATACAGATGCCCCGGAGGACAATTTCCTTGGCCAGGAAACTCCCTCGACTAGCATAAAGA CGAGCGATCAGATTGAGCTTCTAAGAGAGCATCAGAATATTTTGTCCGGAGAGGTGGCACTCCATTCAAGTGCTTTGAAGCGGTTTTCGGAGGAAGCCTC GCGGAATCCCCAGAACGAAGATATTCAAATCGAGATCATGAAGTTGAGCGATGAAATCACGGCGAAGAACGAGCAAATCTCTTTACTCGAAAAGAAAATT TCCGACTCGCTGATGGTCTCTTCACACAGCAAGATGGATGATTTCGAAGTTTCCCAAAAGATTGCTGAGCTCACAGAACAATTGAATGAGAAATCATTCG ACCTCGAGGTTAAAGCTGCAGATAATCGCGTAATTCAAGAACAGCTCAGCCAAAAGGTAACTGAATGCGAGCAGCAGCAGGAAACAATTGCATCGTTACA GCAGCAGCTTGCGGACTCGCTAGACCAAAAATCTTCAAGCGCTCTCGATAGCCACTCGCAACGGTTCCTCGAAATGAAGGGCATCCATGTCCAATGTCGT ATGGAGAAGGAAATGCCATTTCCAGAGCCTAAGGATAGAAATGAGGAACTGCTATTACAACAACAGGCCTCCGAGATCGAAGAATTGAAGCGAAAGCTCG CTCAGTCGACAGCCTCAAAGGAAGAGCTAGAAAACCGAAATAAAAAACTGGCCGAGGACAGCACTTACGCCAAGGGACTAGCTTCAGCCGCTGCGGTCGA GCTCAAAGCCTTATCGGAAGAAGTCGCAAAGCTGATGAACCAAAACGAGAGACTGTCAGCCGAGCTGGCATCGCTAAAGAGCTCGTCACCAACGAATCGC AGAAACAGCACCGGCGGCGGTGGTGGTGCTACATTTCGAAACGGGCGGAGGGAGAGTCAGATCGGGAAGCGGCTCGACCAACAACCATCCGGGCCAACCA CGGAGCATCTCAAGAGAGAGCTGGCGGTTAGTCGGGATAGGGAACAGCAGTATGAGGCTGCACTCGTCGAGAAGGACCAGAGAGAGGCCGAGCTGCAAAG GAAAGTAGAAGAGTCGAAACAGAGGGAAGCGTACCTGGAGAACGAACTGGCGAACATGTGGGTGCTCGTGGCGAAATTGAAGAAGACGCAATCCGGCAGT GGGGATACTACCGAGGCTTCTACTTGA
AA sequence Show only first row Show all	>Lus10016236 pacid=23142744 polypeptide=Lus10016236 locus=Lus10016236.g ID=Lus10016236.BGIv1.0 annot-version=v1.0 MLSAVHGFNAGIPFLQNRLKGPKWLPLVVAFPPLLMYSATCATLGGSSKAANSTPSSSTTTSSSKHFVETSIDGHSSPASSSVRSKPPQYFYSESLPVDG GRSKENVTVTVRFRPLSPREIRQGEEVAWYADGETLVRSEHNPTIAYPYDRVFGPTTTTRHVYDVAAQHVVSGTMDGVNGTIFAYGVTSSGKTHTMHVVN DLLNPAGQNLRIREDAQGTFVEGIKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENCEGESVNLSQLNLIDLAGSESSKA ETTGMRRKEGAYINKSLLTLGTVISKLTEGRASHIPYRDSKLTRLLQSSLSGLGRVSLICTVTPASSSSEETHNTLKFAHRAKHMEIQAAQNKIIDEKSL IKKYQNEIRCLKEELEQLKKGIVTVPQLQNISEDDIVLLKQKLEDGQVKLQSKSEEDEEAKDALMSRIQRLTKLILVSSKASQSPRISQRPIPRRRHSFG EEELAYLPYKRRDLILDEENVDFYVSLEGNPEATDDTLKEKKTKKNGLLNWLKLRKKDGLGTSTSDKSSGAKSNSTPSTPQAETSHSHSELRHGHSLLME SSPSAELHSDVRQDTDAPEDNFLGQETPSTSIKTSDQIELLREHQNILSGEVALHSSALKRFSEEASRNPQNEDIQIEIMKLSDEITAKNEQISLLEKKI SDSLMVSSHSKMDDFEVSQKIAELTEQLNEKSFDLEVKAADNRVIQEQLSQKVTECEQQQETIASLQQQLADSLDQKSSSALDSHSQRFLEMKGIHVQCR MEKEMPFPEPKDRNEELLLQQQASEIEELKRKLAQSTASKEELENRNKKLAEDSTYAKGLASAAAVELKALSEEVAKLMNQNERLSAELASLKSSSPTNR RNSTGGGGGATFRNGRRESQIGKRLDQQPSGPTTEHLKRELAVSRDREQQYEAALVEKDQREAELQRKVEESKQREAYLENELANMWVLVAKLKKTQSGS GDTTEAST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12020			P-loop containing nucleoside t...		Lus10016236 [exp]	0	1
AT2G27900			unknown protein		Lus10009613 [exp]	3.9	0.8950
AT1G12430		AtKINUa, ARK3, ...	phosphatidic acid kinase, Arab...		Lus10007014 [exp]	5.3	0.8703
AT3G06440			Galactosyltransferase family p...		Lus10032650 [exp]	7.5	0.8471
AT5G14720			Protein kinase superfamily pro...		Lus10032144 [exp]	8.9	0.8566
AT4G29900		CIF1, ATACA10, ...	COMPACT INFLORESCENCE 1, autoi...		Lus10001638 [exp]	10.2	0.8574
AT4G18490			unknown protein		Lus10034597 [exp]	10.7	0.8225
AT2G43240			Nucleotide-sugar transporter f...		Lus10027009 [exp]	11.2	0.8505
AT5G18190			Protein kinase family protein ...		Lus10011091 [exp]	13.7	0.8389
AT2G19950		GC1	golgin candidate 1 (.1.2)		Lus10012966 [exp]	14.1	0.8457
AT2G43180			Phosphoenolpyruvate carboxylas...		Lus10026743 [exp]	14.1	0.7867

Compare expression of checked genes

Lus10016236 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.