Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41940 105 / 1e-27 C2H2ZnF ZFP8 zinc finger protein 8 (.1) AT3G58070 103 / 3e-27 C2H2ZnF GIS GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G06650 88 / 1e-21 C2H2ZnF GIS2 GLABROUS INFLORESCENCE STEMS 2, C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G67030 70 / 8e-15 C2H2ZnF ZFP6 zinc finger protein 6 (.1) AT1G68360 63 / 7e-12 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G80730 58 / 2e-10 C2H2ZnF ATZFP1, ZFP1 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) AT1G24625 57 / 5e-10 C2H2ZnF ZFP7 zinc finger protein 7 (.1) AT5G10970 57 / 7e-10 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G25160 56 / 1e-09 C2H2ZnF ZFP3 zinc finger protein 3 (.1) AT5G14010 54 / 2e-09 C2H2ZnF KNUCKLES, KNU KNUCKLES, C2H2 and C2HC zinc fingers superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017229 [exp] 126 / 1e-36 AT3G58070 120 / 5e-34 GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10021081 [exp] 120 / 3e-33 AT3G58070 147 / 3e-43 GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10017609 [exp] 63 / 6e-12 AT1G67030 113 / 2e-31 zinc finger protein 6 (.1) Lus10033567 [exp] 62 / 7e-12 AT1G67030 113 / 2e-31 zinc finger protein 6 (.1) Lus10008698 [exp] 58 / 8e-10 AT1G80730 86 / 2e-19 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) Lus10014350 [exp] 57 / 8e-10 AT1G80730 110 / 1e-29 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) Lus10018328 [exp] 56 / 1e-09 AT5G10970 94 / 6e-24 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10017125 [exp] 56 / 2e-09 AT5G10970 95 / 4e-24 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10026121 [exp] 56 / 4e-09 AT5G10970 85 / 1e-18 C2H2 and C2HC zinc fingers superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G195100 [exp] 130 / 1e-37 AT3G58070 156 / 4e-47 GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.016G060600 [exp] 128 / 1e-36 AT2G41940 155 / 1e-46 zinc finger protein 8 (.1) Potri.004G097900 [exp] 67 / 2e-13 AT1G67030 100 / 2e-26 zinc finger protein 6 (.1) Potri.010G122400 [exp] 64 / 3e-12 AT1G68360 149 / 2e-44 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.010G140700 [exp] 61 / 2e-11 AT5G14010 66 / 9e-14 KNUCKLES, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.017G116300 [exp] 61 / 4e-11 AT1G68360 99 / 6e-25 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.008G123100 [exp] 60 / 6e-11 AT1G68360 123 / 4e-34 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.002G199200 [exp] 59 / 6e-11 AT1G67030 71 / 2e-15 zinc finger protein 6 (.1) Potri.018G021400 [exp] 58 / 3e-10 AT5G10970 165 / 8e-50 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.003G180600 [exp] 58 / 5e-10 AT5G10970 144 / 1e-41 C2H2 and C2HC zinc fingers superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016238 pacid=23142689 polypeptide=Lus10016238 locus=Lus10016238.g ID=Lus10016238.BGIv1.0 annot-version=v1.0 ATGGGTGCCGAAAGAGAGACTCACGACTTCATGAACGTACAATCCTTCTCCCAGCTCCCTTTCCTCCGCCCACCGGCCTCCCAACCCCCCGCCGTTCGCC TTTTCGGAATCGAGTTCGCCAAGGAAAACGCCGTCGTTTCCAACTCCACGGTCCCTACAAATTATATAAATAGCGACGGGAGAGTAAGCAACAACAACAA TAACAACCGGAAATTCGAGTGTCACTATTGCTGCCGCAACTTCCCGACATCTCAGGCGCTCGGCGGCCACCAGAACGCCCACAAGCGCGAGCGCCAGCAC GCCAAGCGAGGCGGGCCCCACGATTTTCCCCACGCGCAACAGTATCCCACCTTCTACGCGCCGAGGACGGCGGCAACTGCTACCGGCGGCGCGTTTGCTT CTTCGAGGTTTTATAATAATAGCGGAGGAGGAGGTGGTTCCCTGCTAGGGCCCACCATAACGGGGTGGCGAGTTGATCATCATCAGGAGGTGGTGGGGGT TCGCGGCGGCGGCGGAGGAGTTGCGACGGCGGCGGCAACGGTGGAAGGGCTGTTTGGTAATTATGAGGTGAAGAAGAGCGTGGAGCAAGACCATCATCAC GTGAGTTTAGATCTTCGATTGTAA
AA sequence Show only first row Show all	>Lus10016238 pacid=23142689 polypeptide=Lus10016238 locus=Lus10016238.g ID=Lus10016238.BGIv1.0 annot-version=v1.0 MGAERETHDFMNVQSFSQLPFLRPPASQPPAVRLFGIEFAKENAVVSNSTVPTNYINSDGRVSNNNNNNRKFECHYCCRNFPTSQALGGHQNAHKRERQH AKRGGPHDFPHAQQYPTFYAPRTAATATGGAFASSRFYNNSGGGGGSLLGPTITGWRVDHHQEVVGVRGGGGGVATAAATVEGLFGNYEVKKSVEQDHHH VSLDLRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58070	C2H2ZnF	GIS	GLABROUS INFLORESCENCE STEMS, ...		Lus10016238 [exp]	0	1
AT1G77090			Mog1/PsbP/DUF1795-like photosy...		Lus10018931 [exp]	3.3	0.9365
AT1G05140			Peptidase M50 family protein (...		Lus10027190 [exp]	4.0	0.9351
AT3G60690			SAUR-like auxin-responsive pro...		Lus10015879 [exp]	4.6	0.9209
AT1G61930			Protein of unknown function, D...		Lus10020047 [exp]	5.2	0.9299
AT5G08410		FTRA2	ferredoxin/thioredoxin reducta...		Lus10041002 [exp]	5.3	0.9247
AT5G52450			MATE efflux family protein (.1...		Lus10029668 [exp]	6.0	0.9193
AT4G00895			ATPase, F1 complex, OSCP/delta...		Lus10012618 [exp]	7.4	0.9247
AT5G03555			permease, cytosine/purines, ur...		Lus10014397 [exp]	7.4	0.9172
AT3G60690			SAUR-like auxin-responsive pro...		Lus10009286 [exp]	9.2	0.9118
AT5G17170		ENH1	enhancer of sos3-1, rubredoxin...		Lus10003157 [exp]	11.2	0.9227

Compare expression of checked genes

Lus10016238 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.