Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58060 574 / 0 Cation efflux family protein (.1) AT1G79520 358 / 1e-121 Cation efflux family protein (.1.2) AT1G16310 356 / 1e-120 Cation efflux family protein (.1) AT2G39450 325 / 6e-109 ATMTP11 Cation efflux family protein (.1) AT2G47830 56 / 2e-08 Cation efflux family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029304 [exp] 820 / 0 AT3G58060 577 / 0.0 Cation efflux family protein (.1) Lus10009598 [exp] 366 / 2e-124 AT1G16310 518 / 0.0 Cation efflux family protein (.1) Lus10001768 [exp] 365 / 5e-123 AT1G16310 521 / 0.0 Cation efflux family protein (.1) Lus10040318 [exp] 360 / 3e-122 AT2G39450 587 / 0.0 Cation efflux family protein (.1) Lus10023439 [exp] 352 / 3e-119 AT2G39450 585 / 0.0 Cation efflux family protein (.1) Lus10016242 [exp] 144 / 1e-42 AT3G58060 119 / 1e-33 Cation efflux family protein (.1) Lus10029300 [exp] 100 / 7e-26 AT3G58060 61 / 3e-13 Cation efflux family protein (.1) Lus10000061 [exp] 96 / 1e-22 AT1G16310 165 / 6e-49 Cation efflux family protein (.1) Lus10016244 [exp] 74 / 8e-14 AT3G58050 851 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G010200 [exp] 597 / 0 AT3G58060 540 / 0.0 Cation efflux family protein (.1) Potri.001G010000 [exp] 585 / 0 AT3G58060 529 / 0.0 Cation efflux family protein (.1) Potri.003G215600 [exp] 577 / 0 AT3G58060 521 / 0.0 Cation efflux family protein (.1) Potri.001G010300 [exp] 566 / 0 AT3G58060 479 / 4e-169 Cation efflux family protein (.1) Potri.010G211300 [exp] 366 / 5e-125 AT2G39450 598 / 0.0 Cation efflux family protein (.1) Potri.008G049600 [exp] 364 / 3e-124 AT2G39450 595 / 0.0 Cation efflux family protein (.1) Potri.008G083600 [exp] 365 / 4e-124 AT1G16310 521 / 0.0 Cation efflux family protein (.1) Potri.010G172800 [exp] 361 / 9e-123 AT1G16310 585 / 0.0 Cation efflux family protein (.1) Potri.010G172700 [exp] 359 / 5e-122 AT1G16310 545 / 0.0 Cation efflux family protein (.1) Potri.010G172900 [exp] 357 / 1e-120 AT1G16310 572 / 0.0 Cation efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01545 [flax] [poplar] Cation_efflux Cation efflux family
Representative CDS sequence Show only first row Show all	>Lus10016239 pacid=23142747 polypeptide=Lus10016239 locus=Lus10016239.g ID=Lus10016239.BGIv1.0 annot-version=v1.0 ATGGAAGGAGAAGGAGGTGGATTGGATCATGATGATACCAAGACTCCATTGCTGAAGCAGCAGTCTCGTCACTCCGTGAACAGCCTGAAGGGCAATTTCT TGTCGAAACTGCCGGAGAAAGTCCGTTCTGGGATCGACCCTGAATCTCCTTTCGACCTTGATCTCTCCAAGACAACTGGCCTGATTGAAGGTGAAAAGGA ATACTACGAGAGACAATTTGCTACCTTGAAATCTTTCGAGGAAGTCGACTCTCTCGAGGAACCACAAGCCGTTGATGAAGAGCATGATATGCAAGAGCAA GCTCAGCATGAGCGAGCCATGAACATATCTAACTGGGCCAACGTGTTTCTACTAGCTTTGAAGATATATGCTACTGTGAAGAGTGGATCTCTAGCTATTG CTGCCTCAACGCTGGATTCTTTACTGGATCTGATGGCTGGTGGGATCCTTTGGTTCACTCACCTTTCCATGAAGAGCATCAACATCTACAAGTATCCTAT CGGAAAGTTGAGGGTCCAACCAGTCGGAATCATCATTTTCGCTGCTATCATGGCTACCCTCGGGTTCCAGGTGCTGGTACAAGCTATACAAAAGCTAATC ACGGACGAGCCCTCCGAAAAAATGACATCGAACCAGTTAGTTTGGATGTATGCGATCATGCTGACAGCGACATTCGTCAAGCTCGCATTATGGTTCTACT GTAGAAGATCGGGGAACAAAATTGTCCGTGCTTATGCAAAGGACCACTACTTCGACGTGGTAACCAATGTAGTTGGTCTCGTTGCTGCTGACCTTGGTGA CAGATTCTACTGGTGGATTGATCCGGTTGGAGCGATCATCCTTGCAGTTTATACGATTGCAAACTGGTCCGGCACTGTGTTAGAGAATGCAGTTTCTCTA GTTGGACAGTCGGCTCCTCCAGAGTTCCATCAGAAGCTCACGTACCTTGTTCTCCGGCACCACCCACAAATCAAACGAGTGGACACCGTTCGTGCATATA CGTTCGGTGTACTCTATTTCGTCGAGGTCGACATAGAGCTACCGGAGGACTTGCCGCTGAAAGAAGCTCACGCCATCGGAGAGTCATTGCAAATAAAGAT CGAAGAGCTCCCCGAAGTGGAGAGGGCGTTTGTGCACCTAGATTACGAGTGCACTCACAAGCCGGAGCACACTGTCCTGAGCCGAATACCAGATGGTTTG GATTAA
AA sequence Show only first row Show all	>Lus10016239 pacid=23142747 polypeptide=Lus10016239 locus=Lus10016239.g ID=Lus10016239.BGIv1.0 annot-version=v1.0 MEGEGGGLDHDDTKTPLLKQQSRHSVNSLKGNFLSKLPEKVRSGIDPESPFDLDLSKTTGLIEGEKEYYERQFATLKSFEEVDSLEEPQAVDEEHDMQEQ AQHERAMNISNWANVFLLALKIYATVKSGSLAIAASTLDSLLDLMAGGILWFTHLSMKSINIYKYPIGKLRVQPVGIIIFAAIMATLGFQVLVQAIQKLI TDEPSEKMTSNQLVWMYAIMLTATFVKLALWFYCRRSGNKIVRAYAKDHYFDVVTNVVGLVAADLGDRFYWWIDPVGAIILAVYTIANWSGTVLENAVSL VGQSAPPEFHQKLTYLVLRHHPQIKRVDTVRAYTFGVLYFVEVDIELPEDLPLKEAHAIGESLQIKIEELPEVERAFVHLDYECTHKPEHTVLSRIPDGL D

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58060			Cation efflux family protein (...		Lus10016239 [exp]	0	1
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10012399 [exp]	3.6	0.7594
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10017201 [exp]	8.1	0.7079
AT5G45820		PKS18, CIPK20, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10034212 [exp]	8.5	0.7332
AT3G61040		CYP76C7	"cytochrome P450, family 76, s...		Lus10027425 [exp]	17.2	0.6318
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Lus10026931 [exp]	18.6	0.6445
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Lus10002490 [exp]	22.9	0.7080
AT5G34850		ATPAP26, PAP26	purple acid phosphatase 26 (.1...		Lus10008054 [exp]	25.5	0.6440
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10011335 [exp]	27.7	0.6921
AT5G43280		ATDCI1	"delta\(3,5\),delta\(2,4\)-die...		Lus10002583 [exp]	32.4	0.7244
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10021892 [exp]	35.0	0.6206

Compare expression of checked genes

Lus10016239 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.