Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22060 109 / 2e-23 unknown protein AT5G52280 93 / 1e-18 Myosin heavy chain-related protein (.1) AT5G41140 63 / 3e-09 Myosin heavy chain-related protein (.1.2) AT1G63300 62 / 6e-09 Myosin heavy chain-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029303 [exp] 3033 / 0 AT5G52280 126 / 6e-29 Myosin heavy chain-related protein (.1) Lus10017237 [exp] 531 / 1e-162 AT1G63300 112 / 8e-25 Myosin heavy chain-related protein (.1) Lus10037927 [exp] 239 / 2e-63 AT1G22060 99 / 2e-20 unknown protein Lus10020915 [exp] 110 / 9e-24 AT1G22060 985 / 0.0 unknown protein Lus10033461 [exp] 109 / 3e-23 AT1G22060 978 / 0.0 unknown protein Lus10024517 [exp] 81 / 1e-14 AT5G41140 482 / 9e-154 Myosin heavy chain-related protein (.1.2) Lus10008012 [exp] 77 / 1e-13 AT5G41140 473 / 3e-150 Myosin heavy chain-related protein (.1.2) Lus10001481 [exp] 72 / 6e-12 AT5G41140 476 / 1e-150 Myosin heavy chain-related protein (.1.2) Lus10038860 [exp] 65 / 7e-10 AT1G63300 614 / 0.0 Myosin heavy chain-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G120400 [exp] 428 / 2e-124 AT1G22060 121 / 2e-27 unknown protein Potri.008G029800 [exp] 285 / 2e-77 AT1G22060 117 / 5e-26 unknown protein Potri.005G170066 [exp] 105 / 3e-22 AT1G22060 1031 / 0.0 unknown protein Potri.002G091700 [exp] 105 / 4e-22 AT1G22060 1546 / 0.0 unknown protein Potri.015G143800 [exp] 103 / 7e-22 AT5G52280 594 / 0.0 Myosin heavy chain-related protein (.1) Potri.003G124600 [exp] 98 / 4e-20 AT1G63300 810 / 0.0 Myosin heavy chain-related protein (.1) Potri.012G141200 [exp] 80 / 2e-14 AT5G52280 322 / 7e-95 Myosin heavy chain-related protein (.1) Potri.001G106700 [exp] 54 / 1e-06 AT1G63300 603 / 0.0 Myosin heavy chain-related protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016240 pacid=23142688 polypeptide=Lus10016240 locus=Lus10016240.g ID=Lus10016240.BGIv1.0 annot-version=v1.0 ATGTTCAGGCTGCACAAGATCAAGTCGGACCGGTTGTCTCTAGGGGAGCGGATCGATTTCAAGATCTCCCATTTCAAAGCACTCCAGGTACCAAGAGGAT GGGACAAGCTCTATGTGACAGTGATATCGGTGGAGACAGGGAAGACTATAGCGCGGTTAAGCAAAGCAGTTGTGAAGAATGGTAGCAGCTGCCAGTGGGA AGAGAGCTTTACCGAATCGGTTTGGGTCTCACCCGACAATTCATCAAAGGTGCTTGAAGACTGTATCTTCAAGTTCGTTGTTGCAATGGGATCGGCGAGA TCTGGTATTCTGGGAGAGGCGACTGTGAACATGTCGAGCTATATCAGCTCGAGTTCAGCAGTTTCGGTCTCTTTCCCTTTGAAGAAATGCGATTACTCCA CTGTTCTTCATGCCAAAATTCAGTGCCTGACACCAATGGCGAATCTCAGGAATGCAGAGGGCAAAGAAACTAACCTGACGGAGAAAGATGGCAGAGAAGA CTTACGAGAGGACGAAGAAGGAACCAAATCTGATCAGGAATCCGACACAGCTTCTCCGAAGAGCGGTCCTTCTTACGGTAGTAGTGACACAGGCTCTCCA CCTGTCCCGGCCGGTCCTGAAACCCGGGAAGCTAGTTCCTCCGCAACGAATTCTCCCGGCAGCGAAGATTCGGAAGAAGCTGCAACAGCAGGCAGGCCTG TTCTGTTTCCTTCGAAACCAAGCCTGGTACGAAGAGAACGAAGAACCAGTTCCGGAAATGGAATTTCGAGTATGAACTATGTGGTGGACAGTCCGCGATC CGAAAGATCCTTACCCACGAGGAGAATCCCGCGTCCAGTAAGCCGTTCAGGGGAAATCCATCAGGAATTCGGCGTTAGCCGGCTGAGAAATTCAGCTTTA CGAACCATGGATTCCTCCTCGACTTCCCAGACGTTCCTGGAAGCTGCAGAGGAAACAATCGGAGACTTAAGGACGCAGGCCAAGATGTGGGAGAGGACTG CCAGGAAGCTGATGCTAGAAATGGACTACCAGAAGAAGGAAAACGTGGAGCTTTCCAGGAATCAAGGGAATCAGGAAATGGAGTTCACGGAGGCTTGCGC CGAAAGGGACGGGTTAAGGAAAGAAGTCGAGCAGCTGAAGCAGTTGTTAGCGAAGGCGAAGATGAAGCCGCCTCCTTTGGATAATCCAAGCGAAGGTACG TGGCAAATGGTTAAGGAGTTGGAAAGGGAGATTAGTTTCCAGAAGGAAACGAGTAGAAACCTGACGATGCAGCTTAAGAGGAGTCAGGAGTCCAATGTTG AGCTCGTTACTGTTCTTCAGGATCTTGAAGAGACGCTGGAGAAGCAGAAGGTTGAGATCGAGAGTCTTTATGATATGGAGTCGAGATTCAGTGAGTTGGA AGATGCTATGGAAACGAGCGCCGAGAGTAACAAGAACCTGACGGTTCAGATTCTGAAACTTCAGGAATCTGAAAAGGATTTGCTCAATAAAATTCGCGAG CTGGAATCTGAAAAGGATCCCACCACTCAAAGTACCGAGAGCGTCCTGAGTCGAGAACGAGAATTCGAGAGCGTTAAAATGGAGATGCAAGGCAGAGTCA GAGAGCTTACCGAGGAGCTTGATGGAGTAAGAGCAGAGGTGAAAAGACTCGAGGCAGGCTTGGCTTTGAAACAGGTGGAGAATAAGGATCTTCAGAGATG TAGAACTGGAGCGGAAGCCAGGGTTTCGGTTCTTGAGAAGGAGAAGGAACATTTGGAGCTTGAGTTGGAAACAGTGACGAGAGAAAACGAGATTGCTTCC AGGTGCTTGAATGACCTGCAAAATGATTTAGCAATAATAAGCAGCAACCTTGAAACTCATGCTTCCGTCAATAACATCCTCGAAAGAAAATCAGTGGAGC TAGAACAGAACAAGCAAGAAATGGAGCTTTGTTTATCAGAACTAAGGCAGGAGAATGAAGATCTATCAACACACATTCACGAGTTGGAAACTCGGTTAAG GTCAGAAGCAAGTGATCATAAATCCAAGATATGTGAACTTGAGAAAGAGCTAAAGAAGGCTGAAAGTGATTTCAACGTTTCAGCTCAAGAGATTGAAAGG CTGAAACTTGAGTTGGAAGTTAAAGTCAGTGAAATATCAAAGCAGGTAGATGAAAGCAAGGCTGAGATTCAGAGTCTGGAAACCATTATGCGGGCTAATG AAGAGGAGGTCAGAGATCTTCAGAGGTGGAAAAGTGAGTTAGCAGCCAAGCTTTCTGTTATTCAGGGAGAGAAGGACCAACTGGAGGAGAAGATGGGAGC CATCATGACAGAAAACGATATCGCCACAAGACGATCCAACGAGCTACAATCGGGGCTTACCACGGCCAGAAGCAGCTTAGAGCATCAGATCTCTGCTAAT GAAGGCCTTGAGAGGAAGTCTTTGGAGCTGGAAAAACAGAAGAATGACTTGGAGAAACAATTGTCAGGAACTGAGCAAGACAATCAAGAGTTGTTGATGA GCATAACTGACATGGAAACTCAGCTAAGGTCTGAAGCTACTGACCATGAATCCCAACTGAATTCTGTTGAAGAGAGTTACAAGAAGCTGCTTATGCAGAT TGATAGCGACTACAACAATTCACTAGCAAAGGTTGAAGAATTGAGAACGGAGCTAGAAGCTGAAGTTGCAGAACTGAAAGCAGAACTCAGTGACAGGAAG GCAGAGATTGAGATACTTGATGCCTGTTTGCATGCCAAAGAAGAGGAGATCGGACAGCTTCAAAGGCACACAAGGGAATCAGAGGCCAAAATTTTCCATT TGAAGGAGGAAAAATGCCAGCTAGAGAACAACATGGAAACAGTCGTGGAAGAAAATGACGTTGCAGCGAGACGCTTGAATGACTCTCAACAGGAAATAAT TATGCTCAGAAGCAGTGTTGAATCCCATGTTGCTTCAAACAATGCTCTTGAGACCAAATGCTCGGAGCTTGAAGGGAAGAAGCTAGAATTGGAGCTCCAT TCTTCAGAACTAAAGCAGGGAAATGAACAGCTCGCCACACTTTTGTCAGAATTGGAAGCTCAACTAAGATCCGAGAGAGATAAACTCGAGTCCCTAAAAC GTGTACTTGAAGAAAAGGAGGAACAGCTAAAGGAAGTTGATAACAGATACAATATTTTGAGGCAAGAGTTGGAAAGTGCTAAAAAGGAGATGGAAGTTAC AGTCTCTGAGCATGCTAATGAACTTACTGAGAAAATGGCTGAGATAAAAGGACTGGAGTCTTTGTTACAGTCAGAAGAAGAAGAAAATGCGAGCCTTCAG TCTTTGCTGCAGTCAAAAGAAGAAGAAAACAGGAGCCTTCAGTCTCTACTGCAGTCAAAAGAAGAAGAAATTGAGAGCCTTCAATCTGTGTTGCAGTCAA AAGAAAAAGACATTGTGAACCTTCAGGCCTTGATGCAGTTAAAAGAAGAAGAAATTGTTAACCTTCAGGCTTTGCTGCAGTCAAAAGAAGAAGAAAACAG GAGCCTTCAGTCTCTACTGCAGTCAAAAGAAGAAGAAATTGAGAGCCTTCAATCTGTGTTGCAGTCAAAAGAAAAAGACATTGTGAACCTTCAGGCCTTG ATGCAGTTAAAAGAAGAAGAAATTGTTAACCTTCAGACTTTGCTGCAGTCAAAAGAAGAAGAGATTGGGAGCTTTCAGTCGTTGGTGCAGTCAAACGAAG CACAAATTGGGGGCCTTCAGACTTTGCTGCAGTCAAAAGAAGAAGAAATTGGGAGCCTTCAGACTTCGCTGCAGTCAAAAGAAGAGGAGATCGGGAACCT TCAGACGTTACTGCAATCAAAAGAAGAAGAAATTGGGATCCTTCAGTCTCTGGTGCAGTCAAAAGAAGAAGAAATAGGGAACCTTCAGTCTTTTGTGCAG TCAAAAGAAGAACAAACTGATAACCTCCAGTCTTCGCTGCAATCAAAAGAAGAAGAAATTGGTGCCCTTTGGTCTTTGCTGCAGTCAAAACAAGAAGAAA TGGCGAACCTTCAGTCTTTCTTGCAGTCAAAAGAAGAAGCAATTGTGAACCTTCAGGCTTTGCTGCAGTCAAAAGAAGAAGAAACTGGAAACCTTCAGTC TTTCTTACAGACAAAAGAAGAGGTAATTGGGAACCTTCAGATATGCAACAGAGAATCAGAGTCTGAACTTGTTACCCTGGAGCAGGAGAAGCATCAGCTT GAACACGACATGGAAACAGTCATGAGAGAATATGTTGAAGCCAGGAACCGGTTGAAAGACTTGCACAGTAGCATCGACTATCATGTTACTGCCATGGAAG TGACTGAAAGTGATCATTCGTCAGAGAGGAAGGAGGAAATTCAAGGTTTGTCCTCCTCCATATCTGACCTGGAAGCTAAAATGTTGCACCTCAAAAGAGA GAGGGAATCGACGGAGCAAGAAGTCAAGGACTCCAAGTCCGAGGCCACGAGTTTGAAGGACGAGATTGCCAGGCTGACTGACGAAATTGAGACGGAAAGG ATGAACATGAAGAATCTGCTGCTGCAGATAAATAATGAATGCATAACAGCACATGAGGAAAACGAGTGCCTGAAAAATGAGATTCAGAACTTGCAAGCCA CATATGAAAGCTTTAGAGAAGATCATAATGCAATTCTGGTAAAGAACGAAGAGTTGGTAAGGGAAAACACTGATCTGGAAAGTCAACGCAACCATTTAGA GGCAACATTGAAGAATACTCAATTAACCCTTGATGAGTTCTCCAAGAGAATTATAAACTTGGAAGATGAAAATGAATGTCTGGAAGAGAAGAGTCACAGG TCACAAGCCACAACTGAAGCCTTCATAGAAGAACATAATGCGTGTCTGGTGAAGAATGAAGAGTTGGCAAAGATGAACACTTATCTAAAGACGGAGCTGA AGAATGCTCAGTTAAGCCTTGATGAGTTCGCCAAGAGGGTTATGGGTTTTGAAGAGAATTTTTATTCACTTGAGCAAGAGAGTGCCACCAAGGTTAAGAA TCTAGCTTCAAAAGTTGATCAATTGTACAGCAAATTCGAGGAACATGTAGAAAATCAGAAGGAAGCTAGACCGACTACTTCAGAAATGGAATTCAGCATT GAAGAGCTAGCTGCTTTTAAGATAAATCAAGAAAAGCTACAGTCTGAGAATAGAAGAATGACATACCGGTTCGAAGACTACAAGTCATCTGAAGCGAAAT TGAGGACAACAATCAACAAGCTCGAGTTAAAGCTCACGGTTTCTGACTATGAGCGCAACATTCTGAAAGAAGAAGGCATGAAGCTGAAGGCCCAGTTGCT GAAACTAGGACCAGTACACGAACAAGTGTTGGCGTTGAAGACTGAACTCAATGCTGCCAAGTCAGATAAAAATAAGCTCAAATCTTCGCTGAATCTGGTC TCCGCAGAGTGTCAACAACTTGAGGCAGAGAAGAGCTCACTTATTGAAGAAATATCTGTACTCCATAAGTGTGTCCATCAACTAGAGGAACATAAAAGAC AAAGATTCGCCTTGGAAGAGAAGCTGAAAAATATGGAGAGGGATCTGATGGTGAAAGAAGCATTGTGGCAACGCGACGAGCAAGTCAACGATGAGCTCAA CAAGATCAGGAAAGCCAATAAACAGCTCCATAAGATAATGGAGGAACTGGAGGATGAGAAAGATGATTATGCAGCGAAAGCCAGATCGCTCGAGGAAGAG TTGGTGATGATTCAGGAAGAACAGTCGAACTTCTCCAGCAGTAGCAACGTGGATGAAAATGGAGATGCTGGATCATTTGAGCAGCAAATTTCCGAGTCTA GGAATGCAAAATCCTCACTGAGAATGCACAGCAAAAGATTCACATCCGATTCAGCCAAAAAGTGCAACAACAGCGGAGGATCTGCGAGGAAGCCACTGAT GAAGCTGGAATCGATTCACAAGGAAAGAAACGATTACTCAGATTCGTCGCTGGAAAGAGAGCTAAGAGACATTCGAGAGCGGTACTTACAAATGAGCCTG AAGTACGCGGAGGTTGAAGCTCAGCGAGAGGAGCTCGTGATGAAGCTCAGATCCTCGAGCAACGGGAACATGGATATTGATTTTTAG
AA sequence Show only first row Show all	>Lus10016240 pacid=23142688 polypeptide=Lus10016240 locus=Lus10016240.g ID=Lus10016240.BGIv1.0 annot-version=v1.0 MFRLHKIKSDRLSLGERIDFKISHFKALQVPRGWDKLYVTVISVETGKTIARLSKAVVKNGSSCQWEESFTESVWVSPDNSSKVLEDCIFKFVVAMGSAR SGILGEATVNMSSYISSSSAVSVSFPLKKCDYSTVLHAKIQCLTPMANLRNAEGKETNLTEKDGREDLREDEEGTKSDQESDTASPKSGPSYGSSDTGSP PVPAGPETREASSSATNSPGSEDSEEAATAGRPVLFPSKPSLVRRERRTSSGNGISSMNYVVDSPRSERSLPTRRIPRPVSRSGEIHQEFGVSRLRNSAL RTMDSSSTSQTFLEAAEETIGDLRTQAKMWERTARKLMLEMDYQKKENVELSRNQGNQEMEFTEACAERDGLRKEVEQLKQLLAKAKMKPPPLDNPSEGT WQMVKELEREISFQKETSRNLTMQLKRSQESNVELVTVLQDLEETLEKQKVEIESLYDMESRFSELEDAMETSAESNKNLTVQILKLQESEKDLLNKIRE LESEKDPTTQSTESVLSREREFESVKMEMQGRVRELTEELDGVRAEVKRLEAGLALKQVENKDLQRCRTGAEARVSVLEKEKEHLELELETVTRENEIAS RCLNDLQNDLAIISSNLETHASVNNILERKSVELEQNKQEMELCLSELRQENEDLSTHIHELETRLRSEASDHKSKICELEKELKKAESDFNVSAQEIER LKLELEVKVSEISKQVDESKAEIQSLETIMRANEEEVRDLQRWKSELAAKLSVIQGEKDQLEEKMGAIMTENDIATRRSNELQSGLTTARSSLEHQISAN EGLERKSLELEKQKNDLEKQLSGTEQDNQELLMSITDMETQLRSEATDHESQLNSVEESYKKLLMQIDSDYNNSLAKVEELRTELEAEVAELKAELSDRK AEIEILDACLHAKEEEIGQLQRHTRESEAKIFHLKEEKCQLENNMETVVEENDVAARRLNDSQQEIIMLRSSVESHVASNNALETKCSELEGKKLELELH SSELKQGNEQLATLLSELEAQLRSERDKLESLKRVLEEKEEQLKEVDNRYNILRQELESAKKEMEVTVSEHANELTEKMAEIKGLESLLQSEEEENASLQ SLLQSKEEENRSLQSLLQSKEEEIESLQSVLQSKEKDIVNLQALMQLKEEEIVNLQALLQSKEEENRSLQSLLQSKEEEIESLQSVLQSKEKDIVNLQAL MQLKEEEIVNLQTLLQSKEEEIGSFQSLVQSNEAQIGGLQTLLQSKEEEIGSLQTSLQSKEEEIGNLQTLLQSKEEEIGILQSLVQSKEEEIGNLQSFVQ SKEEQTDNLQSSLQSKEEEIGALWSLLQSKQEEMANLQSFLQSKEEAIVNLQALLQSKEEETGNLQSFLQTKEEVIGNLQICNRESESELVTLEQEKHQL EHDMETVMREYVEARNRLKDLHSSIDYHVTAMEVTESDHSSERKEEIQGLSSSISDLEAKMLHLKRERESTEQEVKDSKSEATSLKDEIARLTDEIETER MNMKNLLLQINNECITAHEENECLKNEIQNLQATYESFREDHNAILVKNEELVRENTDLESQRNHLEATLKNTQLTLDEFSKRIINLEDENECLEEKSHR SQATTEAFIEEHNACLVKNEELAKMNTYLKTELKNAQLSLDEFAKRVMGFEENFYSLEQESATKVKNLASKVDQLYSKFEEHVENQKEARPTTSEMEFSI EELAAFKINQEKLQSENRRMTYRFEDYKSSEAKLRTTINKLELKLTVSDYERNILKEEGMKLKAQLLKLGPVHEQVLALKTELNAAKSDKNKLKSSLNLV SAECQQLEAEKSSLIEEISVLHKCVHQLEEHKRQRFALEEKLKNMERDLMVKEALWQRDEQVNDELNKIRKANKQLHKIMEELEDEKDDYAAKARSLEEE LVMIQEEQSNFSSSSNVDENGDAGSFEQQISESRNAKSSLRMHSKRFTSDSAKKCNNSGGSARKPLMKLESIHKERNDYSDSSLERELRDIRERYLQMSL KYAEVEAQREELVMKLRSSSNGNMDIDF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52280			Myosin heavy chain-related pro...		Lus10016240 [exp]	0	1
AT4G17050		UGLYAH	ureidoglycine aminohydrolase (...		Lus10040144 [exp]	2.0	0.7184
					Lus10008493 [exp]	6.2	0.6853
AT5G17260	NAC	ANAC086	NAC domain containing protein ...		Lus10010096 [exp]	11.1	0.6715
AT5G46560			unknown protein		Lus10011046 [exp]	16.5	0.7268
					Lus10039517 [exp]	18.4	0.6625
AT4G20280		TAF11	TBP-associated factor 11 (.1)		Lus10038380 [exp]	24.7	0.6180
AT2G18460		LCV3	like COV 3 (.1)		Lus10014314 [exp]	33.9	0.5588
AT4G35140			Transducin/WD40 repeat-like su...		Lus10025088 [exp]	42.2	0.6218
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10017518 [exp]	42.7	0.6348
AT5G57710			Double Clp-N motif-containing ...		Lus10008902 [exp]	52.4	0.5793

Compare expression of checked genes

Lus10016240 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.