Plant FIBer expression Database

Lus10016243 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G41950 211 / 1e-67 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029301
[exp]
483 / 4e-175 AT2G41950 230 / 2e-75 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G194600
[exp]
251 / 2e-83 AT2G41950 276 / 4e-93 unknown protein
PFAM info
Representative CDS sequence
>Lus10016243 pacid=23142645 polypeptide=Lus10016243 locus=Lus10016243.g ID=Lus10016243.BGIv1.0 annot-version=v1.0
ATGAATTCAATCACATTCCCCTCGACACTCGTTCTTCAGGCGCCATCGAACCATACTCGGTTGAATGGACTATGCATCTCTTCTCACACTTCCAGACATC
CTTCTTCTTTAACTCTGATCACCAACTCGTTCACTCTCCGCACTTGTTCAATCGATGCAGCAGTTCCTTCCGAAGAAGGATCTATACCCGTTATGAGCTT
TGAAGACTTTGTCGAGAAAGACTGGTCCTTTCTCGACCCCGAAGAGCCATCAGATTCTAAAGATGTAAGACGGAACAACAGCCAGATAATTTCTGCAGGA
GGGATCACTGAGGCCTCGAAGGTTTTGGTTTCGACGAGCTCCGAAGAGTTTGTGGATCAACTGGTGGATGAATCATCATTGTACGGTTTCTTGCTTGTTG
TGCATGAATCGCTCTTGACGTTGGCTCTTCTCAAAGAGAAGTATGATGAGAATTTGAAGTGTTGGCAAGGTGAACTGATTGACCTTCCTGAGAAATGGAC
ATCTCTTGATGTTGTCTTCCTGTATTTTCTGCCTGCCTTGCCCTCCAAGCTTGACCAAGTTCTTGAGAGCTTGCCAGACACTGCTCACCAGTACACACTT
GATGAGCGGTTTTCATCCAATGGTGCAAGAGTGGTGATTAGCCATCCGCAAGGAAGAGAAAAGCTGGAACAGCAAAGACAGGAGTATCCAGAACTCATAG
TTTCACAGCTGCCTGATGAGATCTATTTGCAAGAGGTTGCATCATCCCGTTCGTTCAAGGTCACAGAATTCGTGGATGAACCAGGGTTTTATCTTGCTGT
TCTTCAATTTTGTGGTTCAACTGCATAG
AA sequence
>Lus10016243 pacid=23142645 polypeptide=Lus10016243 locus=Lus10016243.g ID=Lus10016243.BGIv1.0 annot-version=v1.0
MNSITFPSTLVLQAPSNHTRLNGLCISSHTSRHPSSLTLITNSFTLRTCSIDAAVPSEEGSIPVMSFEDFVEKDWSFLDPEEPSDSKDVRRNNSQIISAG
GITEASKVLVSTSSEEFVDQLVDESSLYGFLLVVHESLLTLALLKEKYDENLKCWQGELIDLPEKWTSLDVVFLYFLPALPSKLDQVLESLPDTAHQYTL
DERFSSNGARVVISHPQGREKLEQQRQEYPELIVSQLPDEIYLQEVASSRSFKVTEFVDEPGFYLAVLQFCGSTA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G41950 unknown protein Lus10016243
[exp]
0 1
AT5G63310 NDPK1A, NDPKIAI... NDP KINASE 1A, NUCLEOSIDE DIPH... Lus10014787
[exp]
1.4 0.8844
AT3G11750 FOLB1 Dihydroneopterin aldolase (.1) Lus10013600
[exp]
2.8 0.8726
AT2G30942 Protein of unknown function (D... Lus10007167
[exp]
2.8 0.8539
AT3G10670 ABCI6, ATNAP7 ATP-binding cassette I6, non-i... Lus10043429
[exp]
6.2 0.8180
AT1G65650 UCH2 Peptidase C12, ubiquitin carbo... Lus10035444
[exp]
6.9 0.8363
AT2G36230 HISN3, APG10 ALBINO AND PALE GREEN 10, Aldo... Lus10017042
[exp]
7.7 0.8458
AT3G19650 cyclin-related (.1) Lus10002122
[exp]
9.5 0.8324
AT5G59850 Ribosomal protein S8 family pr... Lus10005960
[exp]
9.6 0.8816
AT5G47320 RPS19 ribosomal protein S19 (.1) Lus10027711
[exp]
9.8 0.8686
AT1G28100 unknown protein Lus10002573
[exp]
11.7 0.8284

Lus10016243 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.