Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58050 619 / 0 unknown protein AT2G41960 598 / 0 unknown protein AT3G58060 68 / 2e-11 Cation efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029299 [exp] 1606 / 0 AT3G58050 820 / 0.0 unknown protein Lus10021073 [exp] 1228 / 0 AT3G58050 984 / 0.0 unknown protein Lus10017239 [exp] 746 / 0 AT3G58050 768 / 0.0 unknown protein Lus10016239 [exp] 74 / 2e-13 AT3G58060 574 / 0.0 Cation efflux family protein (.1) Lus10029304 [exp] 74 / 3e-13 AT3G58060 577 / 0.0 Cation efflux family protein (.1) Lus10029300 [exp] 51 / 2e-07 AT3G58060 61 / 3e-13 Cation efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G060200 [exp] 1031 / 0 AT3G58050 1131 / 0.0 unknown protein Potri.006G194500 [exp] 1001 / 0 AT3G58050 1083 / 0.0 unknown protein Potri.001G010000 [exp] 63 / 7e-10 AT3G58060 529 / 0.0 Cation efflux family protein (.1) Potri.001G010200 [exp] 62 / 1e-09 AT3G58060 540 / 0.0 Cation efflux family protein (.1) Potri.003G215600 [exp] 57 / 5e-08 AT3G58060 521 / 0.0 Cation efflux family protein (.1) Potri.001G010300 [exp] 45 / 0.0003 AT3G58060 479 / 4e-169 Cation efflux family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016244 pacid=23142732 polypeptide=Lus10016244 locus=Lus10016244.g ID=Lus10016244.BGIv1.0 annot-version=v1.0 ATGCCGGGACTGCCGCAGAAGAACGAGCAATTCAGTACTAGTAATGTATCGTACTCCGTCTCCAGCAATGGATTCTGGTCCAAGCACAGCAATGATGTCT GTTACAATCAGCTCCAGAAGTTCTGGAGTGGGCTGACGCTTGCAGCTAGGCAGAAACTGTTGCGAATTGACAAGCATACCTTGTTTGAGCATGCTCGTAA GAACATGTACTGTTCTAGGTGCAATGGGCTATTGCTTGAAGGATTTTTGCAGATTGTTATCCATGGGAAGTCATTGCAGCAGGACGGAGGTGCAAATTTT CCCTGCTATAAATCAGGAGCCAAAACACATCAAATGGATGGTGTAACAAATATGATCACGAGCTGTCGAGAAATTCAAGATCCAGCTGTACATCATTGGG GTGGTTTAACAACAACGCGGGATGGATCCTTGACACTTTTGGATTGCTACGTGTGCTCAAAATCTCTTGAAGGACTTCAAAACGTCTTTAATAGTGCCCG TGCACGGGAGAGGGAAAGGGAACTGCTCTATCCGGATGCTTGTGGCGGCGGAGGCCGGGGCTGGATAAGCCAAGGAATGCCAAGTTACAGTAGAGGCCAT GGAACAAGAGAAACATGTGCATTACACACTGCCAGGCTTTCGTGCGACACATTAGTGGATTTCTGGTCAGCTTTGGCAGAAGAGAACAGGCAGTCTCTTC TTAGGATGAAAGAAGAAGATTTCATTGAACGGCTTATGTATAGGTTTGACAGCAAGAGATTCTGCAGAGATTGTAGGAGGAATGTTATCCGAGAATTCAA GGAGCTTAAAGAATTGAAGCGTATGCGAAGAGAACAACGTTGCACTAGTTGGTTTTGTGGCGCAGATACTGCTTTCCAGTATGAGGTGTCAGATGACATG ATACAAGCTGATTGGCACCAAGCATGCTTCATCACGTTGAGGGCTTGGAAAATGGATGGCCGCTGCACTGAGGTTACTGTAAAAGCTCATGCATTAAAGG GTCAACAATGCGTTCATTGCAGGTTAATAGTTGGTGATGGTTTTGTTACAATTACTAGAGGTGAAAGCATCAGAAATTTTTTTGAACATGCTGAAGAGTG TGAGGAAGAAGAGGATGATGACTCCATGGAGAAGGATGGCAATGAGCTTGATGGAGAATGCTCCCGTCCCCAAAAGCATGCGAAGAGTCCTGAACTTGCC CGAGAATTTCTTCTAGATGCTGCTACTGTCGAAAAGGCTTTCAGAGAAGGAACTGCACAACAAAATGCCCATAGCATTTTTATCTACCTTGCACTAAACC TGTTAGAAGAACGGATCTATGTTGCATGCAAAGAAATTATTACCCTGGAAAAGCAGACGAAATTGCTTGAAGAAGAAGAGAAGGAGAAGCGTGAAGAAGA AGAGCGCAAGGAGAGAAGAAGACTAAAAGAAAGAGAAAAGAAGAATCGCAGAAAAGAGAGGTTAAAAGGGAAAGAAAGGGATAAAGATAAGGGTTCTGAA TCGAACGATGTCCCTCTTCTTGATGCAGTTAAGGATGAGTCTTCACTAGCATCCAGTGAAAATCTTAATAACAGTGTCTGTTGCAGGGATTCTGTAAGTG AAACAGGCGATAATTCTGTGTCCAGTCCAGGATCACCGAACACAGAAGAACAATTTTCCAATGGGTGCAGCATGTTCATCGAGCAAGATGATTCGTATGA TTGTCTGGAAGAGGACGTTATAAACGGGAAACATGGAAGTGGCTCTTTCATAGTCGAGCAATCAAAATCTTCTCGCCGGAGATTGAAGTTTTGGAAAGAG GTCCAGCTGGATTCGTCTGATAGACATGGACCAGCTAGTAGATCTGACTCGACGAATCATGGTGACAATTTCGAGATTCCTTCAAGAAGTATCAATGGAT TGAGTAGACCAGCAAGGACGATGGCACCGAAGTTTAACAGTCGAAACTATGGCCCGAGGTTCAGTGAGAAGTTAAATGGTTCCAACAGCCAGGTTAGTGA AAGATATGACTTCCATTCTTGTAGCTGCAATCAAGCTAATGGATACACAGCAAAGGTTGGGAGGGGCAATAACTGTGCCTGTAAGTCTGAACATGCAGCA GATATTCCGAAGCAATTTCATCGTGGTAACAAGTACAGTCAAGCTGATTACACTCATGAAGGTTGTGGAAGACCCAGAAACAAGGGTTCGACCGTGAATC CTTCTGCACCCCATGCCAAGAAAGTATGGGAGCCCATGGATTCTCAGAAGAGGTATCCTAGGACTAATTCAGAGAGTGATTTCTCTAAGCCATCTAGCGA GAACTGTTGGAGCGAAGTCAACGGAAATTCTGTGGAAACTGGTCAGATCGACTGTAAAATGAGTGAAGCTATAGATGATTGCGGTGCTGATGCAGCAAAG GATGGAGAAATCGATTCGAGTCCTCTGAATGGCTCAAAATCAAATGGGACTTCCAATCCCAGCTCCATTATCACGTTGAATTCTGACAACAGTTCGTCGT GTCTGAGCGAAGGAGATAGCAACACCGCCTCTTCAAATCATGGACATCCGGGATCCTCTTCCACATCAGACTCCGAGGACGCCAGTCAGCAATCAGAAGG CAGAGAAACTGGTTTCCCTGAGAGTCATGAAGCTAGAACGCCAAAAAACCCTGGTACACCGAATGTGCAGCCTTCGAACGGTCTGAAGTTCCTTGGAATC CAGTCTGATGGTCCAAGAGTAAGCAGCTTTACAGGAGATGTTCTCACAAAAGCCACTGCCGATCACACTGTCCGTAATGTTACTACCACCGGCGCTCAAC ATCAAGGCGTGTTCGCACCATTGCAGAACCAGACCTTACAGTACTCAGTGTTTCAAGCTCCTCCATCAGTGAGTTACTATCATCAAAATCCAGTCTCTTG GCCAGCCACACCGGCAATCCCCTTTCACCACCCGAACCATCACCACCACCTCTACGCTAGCCCGATGAGGTACGGTCTCAATGGAAACTCGCACTTGTGT ATGCAGTACGGTGGTTCGATGCAGCCTGTCACGACGACAACTCCTCCCGTGTTCAGCCCGAGTCCACCGCAAGTCCTGGTCGCGAAGGCACAACGGGAGA AAAATACCGGAAATTGTGGGAAGATAGATAGCTTTGCCAAACTGAACATGGTGAACAATGATTTCTCCTTGTTCCAGTTCGGGTGGCCTTCGAAAGACGG AGTAGATGTTTCGACAGGAGATCAAATCGAGAGCAATTCGGAGGAGCATGTAATGGAAGAGTACAACTTGTTTGCAGCAAATGAAGAGCAAGAACTGCAC CATGAGAGAGCCATGCAGTTCTCCAACTGGGGCAACCTCTTCCTGCTGGCCTTAAAGATATATGCTACTGTCCAGAGTGGATCGTTAGCTGTTGCTGCCT CGACACTCGATTCTTTGTCAAGTGAGAAGGAATACTACGAGAGACAATTCGCTATATTGAAGTCTTTCGAGGATGTTGATTCGCTTGAGGAATACTACGA GAGACAATTCGCTATATTCGCTTGTATCAATCCTTCCGGGATTTATTGA
AA sequence Show only first row Show all	>Lus10016244 pacid=23142732 polypeptide=Lus10016244 locus=Lus10016244.g ID=Lus10016244.BGIv1.0 annot-version=v1.0 MPGLPQKNEQFSTSNVSYSVSSNGFWSKHSNDVCYNQLQKFWSGLTLAARQKLLRIDKHTLFEHARKNMYCSRCNGLLLEGFLQIVIHGKSLQQDGGANF PCYKSGAKTHQMDGVTNMITSCREIQDPAVHHWGGLTTTRDGSLTLLDCYVCSKSLEGLQNVFNSARARERERELLYPDACGGGGRGWISQGMPSYSRGH GTRETCALHTARLSCDTLVDFWSALAEENRQSLLRMKEEDFIERLMYRFDSKRFCRDCRRNVIREFKELKELKRMRREQRCTSWFCGADTAFQYEVSDDM IQADWHQACFITLRAWKMDGRCTEVTVKAHALKGQQCVHCRLIVGDGFVTITRGESIRNFFEHAEECEEEEDDDSMEKDGNELDGECSRPQKHAKSPELA REFLLDAATVEKAFREGTAQQNAHSIFIYLALNLLEERIYVACKEIITLEKQTKLLEEEEKEKREEEERKERRRLKEREKKNRRKERLKGKERDKDKGSE SNDVPLLDAVKDESSLASSENLNNSVCCRDSVSETGDNSVSSPGSPNTEEQFSNGCSMFIEQDDSYDCLEEDVINGKHGSGSFIVEQSKSSRRRLKFWKE VQLDSSDRHGPASRSDSTNHGDNFEIPSRSINGLSRPARTMAPKFNSRNYGPRFSEKLNGSNSQVSERYDFHSCSCNQANGYTAKVGRGNNCACKSEHAA DIPKQFHRGNKYSQADYTHEGCGRPRNKGSTVNPSAPHAKKVWEPMDSQKRYPRTNSESDFSKPSSENCWSEVNGNSVETGQIDCKMSEAIDDCGADAAK DGEIDSSPLNGSKSNGTSNPSSIITLNSDNSSSCLSEGDSNTASSNHGHPGSSSTSDSEDASQQSEGRETGFPESHEARTPKNPGTPNVQPSNGLKFLGI QSDGPRVSSFTGDVLTKATADHTVRNVTTTGAQHQGVFAPLQNQTLQYSVFQAPPSVSYYHQNPVSWPATPAIPFHHPNHHHHLYASPMRYGLNGNSHLC MQYGGSMQPVTTTTPPVFSPSPPQVLVAKAQREKNTGNCGKIDSFAKLNMVNNDFSLFQFGWPSKDGVDVSTGDQIESNSEEHVMEEYNLFAANEEQELH HERAMQFSNWGNLFLLALKIYATVQSGSLAVAASTLDSLSSEKEYYERQFAILKSFEDVDSLEEYYERQFAIFACINPSGIY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58050			unknown protein		Lus10016244 [exp]	0	1
AT3G58050			unknown protein		Lus10017239 [exp]	1.7	0.9121
AT3G26370			O-fucosyltransferase family pr...		Lus10006227 [exp]	2.0	0.9249
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10013468 [exp]	2.4	0.9155
AT3G14940		ATPPC3	phosphoenolpyruvate carboxylas...		Lus10000065 [exp]	3.2	0.9029
AT5G54830			DOMON domain-containing protei...		Lus10034323 [exp]	4.0	0.9049
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10015531 [exp]	4.2	0.8960
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10007931 [exp]	5.7	0.8884
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10014618 [exp]	6.2	0.8703
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10013467 [exp]	6.3	0.8683
AT2G40980			Protein kinase superfamily pro...		Lus10035407 [exp]	9.5	0.8899

Compare expression of checked genes

Lus10016244 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.