Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06680 1224 / 0 ATSPC98, SPC98, ATGCP3 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) AT5G17410 148 / 7e-37 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2) AT3G53760 112 / 2e-25 ATGCP4 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) AT3G43610 86 / 9e-17 Spc97 / Spc98 family of spindle pole body (SBP) component (.1) AT1G80260 61 / 5e-09 EMB1427 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1) AT1G37010 42 / 0.0001 unknown protein AT1G20570 45 / 0.0003 Spc97 / Spc98 family of spindle pole body (SBP) component (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029296 [exp] 1210 / 0 AT5G06680 998 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Lus10029297 [exp] 328 / 8e-108 AT5G06680 207 / 4e-63 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Lus10029779 [exp] 102 / 4e-22 AT3G53760 1049 / 0.0 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) Lus10042807 [exp] 91 / 3e-18 AT3G53760 1013 / 0.0 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) Lus10026855 [exp] 81 / 2e-15 AT5G17410 805 / 0.0 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2) Lus10020228 [exp] 64 / 6e-11 AT5G17410 382 / 3e-129 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2) Lus10018892 [exp] 58 / 4e-08 AT1G80260 919 / 0.0 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1) Lus10028588 [exp] 57 / 6e-08 AT1G80260 942 / 0.0 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G194200 [exp] 1294 / 0 AT5G06680 1201 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Potri.016G059900 [exp] 1290 / 0 AT5G06680 1301 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Potri.010G180700 [exp] 143 / 4e-35 AT5G17410 994 / 0.0 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2) Potri.014G128400 [exp] 117 / 8e-27 AT3G53760 1076 / 0.0 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) Potri.009G153300 [exp] 72 / 1e-12 AT3G43610 855 / 0.0 Spc97 / Spc98 family of spindle pole body (SBP) component (.1) Potri.016G000100 [exp] 50 / 6e-06 AT1G80260 431 / 3e-137 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0540 [flax] [poplar] GCP PF04130 [flax] [poplar] GCP_C_terminal Gamma tubulin complex component C-terminal
Representative CDS sequence Show only first row Show all	>Lus10016246 pacid=23142662 polypeptide=Lus10016246 locus=Lus10016246.g ID=Lus10016246.BGIv1.0 annot-version=v1.0 ATGGAAGACGAAGATCAGCAGAAGACGATCGATCTGGTTAAGGAGCTAGTTCTCCGTCTCCTCTCTCCCAATCCAACCGCCGCCGCCCCCGCAAACCCTA GTTCGCCCGATCTCACCAATTCTCTCCGTTACGCCGTCCGAATTCTCTCCAGCAGGCTCACTCCGTCGATCGCTCCCGACGCGGCGGCAATCGCTGAGTC CATCAAGCGCCGTCTCGCCACTCAAGGTAAGTCCTCCCAGGCGCTGACGTTCGCCGATCTGAACAACAAGTTTGCGTCCAAAGTAGGGCCCGGTAGTATC AACAACAAGTGGGCGGTTCTTTACTTGCTGAAGATTATATCCGAGGACAGGAAGCTGTCGCATTCCTCGCAGAGTTCGGCGCTCCTGCTGCCGAATTTGA ATCTGGACGACCGTGAATCATTCACAGAAGGGGAAGGGCGTGGTAGTTCGAGGAGAGGGAAAAGTGGGGTTCTTCTGGTGGCGAAGGACCCCGAGAATTT GCGGGAGATTGCGTTTAGGGAGTATGTGAATTTGGTTAGGGAGGAGAATGAGGTGTCGGAGGAGGTTTTAGTGAGAGATGTGTTGTATGCTTGCCAAGGG ATTGACGGCAAGTACGTGATATTCGATTCGAGTGAAGATGGTTATATGTTGCCAGAGACGTGTAAGGTTCCCAGGGCGGGTAGGGGTATGGTGAGGAAGC TTTGTGAATTGGGGTGGTTGTTTAGGAAGGTTAGAGGGTACATTTCTGAAAGTATGGATAGCTTCGCTACCGAAGAAGTGGGAACTTTTGGTCAGGCATT TTGTGCCGCTTTGCAAGATGAGCTTTCTGAGTACTATAGGTTATTAGCTGTGCTCGAGACACAGGCTACGAACCCGATTCCTTTGGTTTCCGGGTCAGCT ACTTCTGGAAACTATCTATCATTGAGGAGGTTATCAGTTTGGTTTGTGGAGCCGATCGTGAAAATGAGGTTAATGGCTGTTTTGGTCGATACTTGCAAAG TCTTGAAGGGTGGTGCCATGGCTGGAGCTATACATTTGCACGCTCAGCATGGTGATCCTCTTGTGAATGACTTCATGAGGAGTTTGCTCCGGCGGGTATG CTCTCCGCTTTTCGAAATGGTCAGACGATGGGTTTTGGAAGGAGAACTGGAAGATATCTTTTCCGAGTTCTTCGTTGTGAGCGAGACAAAGGAATTGGAG TCTGATGTTAGCCAAAAGGGGAAAGAATCTCTTTGGAGGGAAGGTTACAGACTCCATTCCAAGATGCTTCCTTCTTTTATTTCTCAGTCCCTTGCTCAAC GCATTTTGAGGACCGGGAAATCGATCAACTTTCTACGTGTCTGCTGCGATGACCGTGGATGGGCTGATGCTGCCACAGAGGCTGCAGCTGCAGCTGGGAC GAGTACTAGAAGGGGAAGTCTTGGATATGGCGAAACCGATGCACTTGAAAATCTTGTTGCTGAAGCAGCAAAGAGAATTGATAAGCATCTACTGGACGTT ATGTATTCAAGGTATAAGTTCAAAGAGCATTGTCTTGCAATCAAGCGTTATTTATTGCTTGGCCAGGGTGACTTCGTTCAGTACCTAATGGATAGTATAG GGGAAGAGCTTTCTGAACCTGCTAATACCATCAGCACGTTCAAGTTAGCTGGCTTTTTGGAAAGTGCAATCCGATCGTCCAATGCTCAATACGATGACCG AGACATACTAGATAGGGTGAGGGTTAATATGATGGTACAAAGCACTGGTGATAGAGGATGGGATGTGTTCTCATTGGAATATGATGCTAGTGTGCCGTTG AATACAGTGTTCACAGAATCTGTCATGGCCGAATATCGCAGAATCTTTAACTTCCTATGGAAGCTGAGGCGAGTGGAGCATGCACTTATTGGCGCTTGGA AAACGATGAAACCGAATTGCATCACTTCTCATTCTTTTGTTAAGCTGCAGGGTGGGGTTAAATCACAGTTGCTTATAACTCTGAGGCGATGCCAGGTTCT CTGGAATGAGATGAACCATTTCGTCTCAAACTTACAGTATTACATTATGTTCGAAGTATTGGAGGTATCCTGGTCAAAATTTTCGGACGAGATGGAATCT GCAAAGGACCTCGATGATCTTCTTGCGGCACATGAAAATTATCTTCACTCGATTGTCGAGAAGTCTCTCCTTGGTGAACGGTCTCGGCCTCTTTGCAAGT CGCTTTTCGTTCTGTTTGACCTTATATTACGTTATAGAGGTCATGTCGATCGGTTATATGAAGGCATCTACGAGTTGCAAGCAAGAAATGCAGGGTCCTT ACCGTCTAAAGACAAGACCAAATCATCAAAGCAGACTGCAAAAAGACCTTCCAAACCCGGATCATGGATTAGTGACGGAAGGAAAGCTCTCACACAACGC GCCGGGGAATTTCTTCAAACTATGGGGAAAGAATTAAACGCTACTGCAAAGGAATATACCTCTCTCCTGGAAGTTTTCTTATCTGAGTTGCCTGTCCAGC AACACATTGATCTCAAGTTCCTTCTGTTCCGGCTCGACTTCACCGAGTTTTATAGCCGACTCCATCCCACCAAATGA
AA sequence Show only first row Show all	>Lus10016246 pacid=23142662 polypeptide=Lus10016246 locus=Lus10016246.g ID=Lus10016246.BGIv1.0 annot-version=v1.0 MEDEDQQKTIDLVKELVLRLLSPNPTAAAPANPSSPDLTNSLRYAVRILSSRLTPSIAPDAAAIAESIKRRLATQGKSSQALTFADLNNKFASKVGPGSI NNKWAVLYLLKIISEDRKLSHSSQSSALLLPNLNLDDRESFTEGEGRGSSRRGKSGVLLVAKDPENLREIAFREYVNLVREENEVSEEVLVRDVLYACQG IDGKYVIFDSSEDGYMLPETCKVPRAGRGMVRKLCELGWLFRKVRGYISESMDSFATEEVGTFGQAFCAALQDELSEYYRLLAVLETQATNPIPLVSGSA TSGNYLSLRRLSVWFVEPIVKMRLMAVLVDTCKVLKGGAMAGAIHLHAQHGDPLVNDFMRSLLRRVCSPLFEMVRRWVLEGELEDIFSEFFVVSETKELE SDVSQKGKESLWREGYRLHSKMLPSFISQSLAQRILRTGKSINFLRVCCDDRGWADAATEAAAAAGTSTRRGSLGYGETDALENLVAEAAKRIDKHLLDV MYSRYKFKEHCLAIKRYLLLGQGDFVQYLMDSIGEELSEPANTISTFKLAGFLESAIRSSNAQYDDRDILDRVRVNMMVQSTGDRGWDVFSLEYDASVPL NTVFTESVMAEYRRIFNFLWKLRRVEHALIGAWKTMKPNCITSHSFVKLQGGVKSQLLITLRRCQVLWNEMNHFVSNLQYYIMFEVLEVSWSKFSDEMES AKDLDDLLAAHENYLHSIVEKSLLGERSRPLCKSLFVLFDLILRYRGHVDRLYEGIYELQARNAGSLPSKDKTKSSKQTAKRPSKPGSWISDGRKALTQR AGEFLQTMGKELNATAKEYTSLLEVFLSELPVQQHIDLKFLLFRLDFTEFYSRLHPTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06680		ATSPC98, SPC98,...	ARABIDOPSIS THALIANA GAMMA TUB...		Lus10016246 [exp]	0	1
AT1G24510			TCP-1/cpn60 chaperonin family ...		Lus10011401 [exp]	3.0	0.8879
AT1G24510			TCP-1/cpn60 chaperonin family ...		Lus10006457 [exp]	4.9	0.8679
AT2G21050		LAX2	like AUXIN RESISTANT 2 (.1)		Lus10034488 [exp]	5.2	0.8520
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10032176 [exp]	8.2	0.8592
AT2G02160	C3HZnF		CCCH-type zinc finger family p...		Lus10019430 [exp]	10.2	0.8382
AT5G42970		FUS4, EMB134, C...	FUSCA 8, FUSCA 4, EMBRYO DEFEC...		Lus10010816 [exp]	13.5	0.8555
AT4G16143		IMPA-2	importin alpha isoform 2 (.1.2...		Lus10016850 [exp]	15.9	0.8314
AT2G20580		RPN1A, AtRPN1a	26S proteasome regulatory subu...		Lus10039885 [exp]	22.3	0.8348
AT1G07970			unknown protein		Lus10023345 [exp]	22.5	0.8596
AT5G42970		FUS4, EMB134, C...	FUSCA 8, FUSCA 4, EMBRYO DEFEC...		Lus10007164 [exp]	23.8	0.8191

Compare expression of checked genes

Lus10016246 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.