Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05055 565 / 0 ATGTF2H2, GTF2H2 general transcription factor II H2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029294 [exp] 411 / 4e-143 AT1G05055 353 / 2e-120 general transcription factor II H2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G113700 [exp] 599 / 0 AT1G05055 609 / 0.0 general transcription factor II H2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0006 [flax] [poplar] C1 PF07975 [flax] [poplar] C1_4 TFIIH C1-like domain CL0128 [flax] [poplar] vWA-like PF04056 [flax] [poplar] Ssl1 Ssl1-like
Representative CDS sequence Show only first row Show all	>Lus10016248 pacid=23142717 polypeptide=Lus10016248 locus=Lus10016248.g ID=Lus10016248.BGIv1.0 annot-version=v1.0 ATGGACGGTGGGAAAAAACGGTTGAACGGTGAAGCAGAAGAAGAGGAGAACGAGGAAGACGTAGAGAACGAAGGCCGTGAGGCATGGGAGAAACAATACA CCGACGAGAGATCATGGGAGGCCTTGGAAGAGGACGAATCGGGGCTACTTCATGTCGATAACACCGCCATCTATCACTCTCAGTATCGCCGTCGCTTACG ATCTCTTGCTTCCACTTCCGCGGCTTCCAGGATACAAAAGGGTCTCATTCGCTTCCTGTATCTCGTCGTTGATCTTTCCACGGCAGCTGGAGTGATGGAT TTCAAACCGAGTCGGATGGCTGTGATTGCTAAACACGTTGAGGCTTTCATCAGGGAGTTTTTCGACCAGAACCCTCTTAGTCAGATCGGTCTTGTGGCTA TAAAAGACGGGGTTGCTCAATCTTTGACCGAGCTCGGTGGAAGTCCCGAGTCACATATTAAGGCCTTGATGGTCAACTTAGGGTGCTCGGGAGATTCGTC ACTTCAGAATGCGCTAGAACTTGTTCATGACAATCTCTATAAAATTCCATCGTACGGTCATCGTGAAGTTCTGATAACGTATTCTGCTCTCTCGACCTGT GATCCGGGTGATATAATGGAGACTATCCAGAAATGCAAGAAGGCTAAGATTAGGTGCTCAGTTATTGGCCTCTCAGCTGAAATGTTTGTTTGCAAACATC TTTGCCAAGAAACTGGCGGGTCGTATATGGTCGCCCTGGATGAGGGACACTTTAAAGAGCTCTTACTGGAGCACGCTCCACCTCCACCCGCCATTGCTGA ATTTGCCATTGCCAACTTGATCAAGATGGGTTTCCCACAAAGAGCTGCAGAGGGTTCTGTAGCAATCTGCTCCTGTCACAAAGAAGCTAAAGTCGGGGAA GGGTATATATGTCCGAGATGCAAAGCCCGTGTATGTGAACTCCCTACAGAATGTCGTATCTGTGGATTGACCCTTGTTTCATCGCCCCATTTAGCAAGAT CCTATCATCATCTCTTCCCAGTCGAGCCATTCACTGAGGTTTCTGCACGTCAAAATGAACTGAGCAGAATGTCTCAGAAGACTTGCTTCGGTTGTCGACA GAACCTTCTCAATCCTGGTAACAAAGCAGGGCCATGTGTGAGTTGCACAAAGTGCAAGCAGTATTTCTGCCTCGATTGCGACATTTATATCCACGAGAGC TTGCACAACTGCCCTGGGTGCGACAGCCGAGCAGTTACGAAAGCTGCTGCTGTTGTGTAG
AA sequence Show only first row Show all	>Lus10016248 pacid=23142717 polypeptide=Lus10016248 locus=Lus10016248.g ID=Lus10016248.BGIv1.0 annot-version=v1.0 MDGGKKRLNGEAEEEENEEDVENEGREAWEKQYTDERSWEALEEDESGLLHVDNTAIYHSQYRRRLRSLASTSAASRIQKGLIRFLYLVVDLSTAAGVMD FKPSRMAVIAKHVEAFIREFFDQNPLSQIGLVAIKDGVAQSLTELGGSPESHIKALMVNLGCSGDSSLQNALELVHDNLYKIPSYGHREVLITYSALSTC DPGDIMETIQKCKKAKIRCSVIGLSAEMFVCKHLCQETGGSYMVALDEGHFKELLLEHAPPPPAIAEFAIANLIKMGFPQRAAEGSVAICSCHKEAKVGE GYICPRCKARVCELPTECRICGLTLVSSPHLARSYHHLFPVEPFTEVSARQNELSRMSQKTCFGCRQNLLNPGNKAGPCVSCTKCKQYFCLDCDIYIHES LHNCPGCDSRAVTKAAAVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05055		ATGTF2H2, GTF2H...	general transcription factor I...		Lus10016248 [exp]	0	1
AT1G79150			binding (.1)		Lus10034234 [exp]	1.0	0.9470
AT3G05510			Phospholipid/glycerol acyltran...		Lus10020650 [exp]	4.0	0.8994
AT2G46900			unknown protein		Lus10036338 [exp]	5.2	0.8721
AT2G26140		FTSH4	FTSH protease 4 (.1)		Lus10013521 [exp]	8.1	0.8956
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Lus10031212 [exp]	12.9	0.9051
AT2G25580			Tetratricopeptide repeat (TPR)...		Lus10041867 [exp]	16.0	0.8797
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015204 [exp]	17.3	0.9045
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10012434 [exp]	18.5	0.8767
AT3G13224			RNA-binding (RRM/RBD/RNP motif...		Lus10043154 [exp]	19.8	0.8886
AT2G20360			NAD(P)-binding Rossmann-fold s...		Lus10022859 [exp]	19.8	0.8747

Compare expression of checked genes

Lus10016248 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.