Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06290 924 / 0 ATACX3, ACX3 acyl-CoA oxidase 3 (.1) AT1G06310 903 / 0 ACX6 acyl-CoA oxidase 6 (.1) AT5G65110 348 / 3e-110 ATACX2, ACX2 acyl-CoA oxidase 2 (.1.2) AT4G16760 232 / 7e-67 ATACX1, ACX1 acyl-CoA oxidase 1 (.1.2) AT2G35690 230 / 5e-66 ACX5 acyl-CoA oxidase 5 (.1) AT3G06690 197 / 3e-59 acyl-CoA oxidases;oxidoreductases, acting on the CH-CH group of donors;FAD binding;oxidoreductases;acyl-CoA oxidases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039894 [exp] 1116 / 0 AT1G06290 1036 / 0.0 acyl-CoA oxidase 3 (.1) Lus10002177 [exp] 812 / 0 AT1G06290 754 / 0.0 acyl-CoA oxidase 3 (.1) Lus10041711 [exp] 348 / 4e-110 AT5G65110 1199 / 0.0 acyl-CoA oxidase 2 (.1.2) Lus10024038 [exp] 280 / 1e-84 AT5G65110 1122 / 0.0 acyl-CoA oxidase 2 (.1.2) Lus10040183 [exp] 227 / 1e-64 AT4G16760 1051 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10004386 [exp] 224 / 1e-63 AT4G16760 1107 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10004745 [exp] 222 / 3e-63 AT4G16760 1112 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10007815 [exp] 219 / 2e-62 AT4G16760 1019 / 0.0 acyl-CoA oxidase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G123500 [exp] 989 / 0 AT1G06290 1061 / 0.0 acyl-CoA oxidase 3 (.1) Potri.019G092600 [exp] 984 / 0 AT1G06290 1070 / 0.0 acyl-CoA oxidase 3 (.1) Potri.005G077600 [exp] 356 / 2e-113 AT5G65110 1179 / 0.0 acyl-CoA oxidase 2 (.1.2) Potri.007G090400 [exp] 350 / 7e-111 AT5G65110 1203 / 0.0 acyl-CoA oxidase 2 (.1.2) Potri.003G079200 [exp] 220 / 1e-62 AT4G16760 1143 / 0.0 acyl-CoA oxidase 1 (.1.2) Potri.001G155500 [exp] 219 / 3e-62 AT4G16760 1152 / 0.0 acyl-CoA oxidase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0087 [flax] [poplar] Acyl-CoA_dh PF01756 [flax] [poplar] ACOX Acyl-CoA oxidase CL0087 [flax] [poplar] PF02770 [flax] [poplar] Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain CL0087 [flax] [poplar] Acyl-CoA_dh PF00441 [flax] [poplar] Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10016249 pacid=23142654 polypeptide=Lus10016249 locus=Lus10016249.g ID=Lus10016249.BGIv1.0 annot-version=v1.0 ATGTCGTCAGAATCCTCATCCGATCGCGCTTCCCGCCGGACTCGAATCATATCCAATCACCTAAAGAGATCCGTTGATCAGAATCCTCCTGGCGATTCTA TCCGATCGAACGTTTGCTTGAGCTACTCTCCTCCGGAGCTCCACGAGAAGATCGAGTTCGACGTCAAGCGGATGCGGGAGCTTCTCGACGTGCACAATCT CAAGGAGCGGGATTGGCTGTTCGGACTGATGACGCAGAGCGAGTTGTTTAGAGGATCGGGGAAGGAGTTCGTGATGCCGGATTTCAACCAAACGAAAGAG CAGCAGCGGGAGGCGACGATGAAGCGGATCGAGTATTTGAAGGAGAGAGGCGCTTTCGAGAGCTGGTTCGCCACGAGAGGTCCGGAGACTGAGCTGAGGA GGTTAGCGTTGGCGGAAACTCTCGGCGTGTTTGACCAGTCGCTCTCGATCATGGTCGGCGTTCACTTCTTCTTATGGGGTGGAGCCATTGAATTTCTTGG TACAAAGCGCCATCATGACAAGTGGCTAAGGGACACTGAAACCTATAGAACCAAGGGTTGCTTTGCCATGACTGAGTTGGGACACGGAAGTAATGTTCGA GCAATCGAAACAGTTGCGACTTATGACTCCAACACAAATGAGTTTGCAATCAACACTCCTTGTGAATCTGCTCAGAAATACTGGATTGGTGGGGCTGCTA ATCATGCAACACACACAGTAGTGTTTTCGCAGCTCAACATAAACGGAAGAAACGAAGGTGTCCATGCCTTCATAGTTCAGATTAGAGATGACTATGGAAA CATATGCTCGAACATCCGCATTGCAGATTGTGGTCATAAGATCGGTTTGAATGGAGTTGACAATGGTCGAATCTGGTTTGACAATGTTAGAATTCCCAGA GAGAATCTGTTGAACTCTGTCGCGGATGTCATGCCAGATGGACGATATGAGAGTCCAATACAAGACCCTGATCAGAGATTTGCAGCATTCATGGCCCCTC TAACATCTGGTCGTGTAATTATTTCTAGTGCTGCAATTTACTCAGCACAGATTGGTTTAGCGATTGCCATTAGATATGCACTTAGTCGACGGGCTTTCTC GTTCACACCCAATGGACCAGAAGTCCTATTGCTTGATTATCGAAGTCATCAACGGCGACTTTTGCCTCTTCTCGCCAAGACCTATGCAGTGACCTTCGCA AGAAATTACCTGAAGAAGATCTACGTGAAGAGGACACCAGAGTCCCTTAAACTTGTTCATGTCGTTTCCAGCGGATTCAAGGCTGCATTGACATGGCACA ACATGAGAACGCTGCAAGAATGCCGCGAATCATGTGGTGGACAAGGACTCAAGACTGAGAATCAAGTTGGCCACCTGAAGGGCGAATACGATGTCCAGTC CACTTTCGAGGGGGATAACAACGTCCTAATGCAGCAGGTAAGCAAAGCACTGCTTGGTGAGTACATAGCTGCTAATAAGAAGAAGAATAAGGCCTTCTCC AAGGGTCTGCGATTGGAGCATATGAACGAACCTTTGCCAGTCATTCCGTCCCAACTCACAAGTGATACCCTTAGAAGCAGTCATTTCCAGATTTCTGCTC TCCGCTTGAGAGAGCGTGACCTTCTGAATCGTTTTGCTGCGGAGATGTCACAACATAGGTCCAAAGGAGTGAATAAAGACTATGCCTTTGCTCTGGGCTA TCAACTTGCAGAAGACTTGGGTAGAGCTTACTCCGACCGAATAATATATGAATCCTTCGTCGAAGTCGAGGGTGCAGTCTCACCCAGTCCGCTGAAGGAG GTGCTGGGTCAGCTGAGATCCTTGTATGCATTGACGTCCATGGATGAAGACGCCGCATTTCTCCGGTACGGCTACTTGACGACCGCGAACGCCGCCTCCG TTAGAGCTGAGGTGGCGAAGCTTTGCTGCGAGCTCCGGCCTCACGCACTTGGGCTGGTGGGCTCCTTCGGCATTCCAAGTGGGTTCCTCAGCCCAATTGC TTTCGACTGGATCCAATCCAATTCTTGGCCCTCTTCATCGTAA
AA sequence Show only first row Show all	>Lus10016249 pacid=23142654 polypeptide=Lus10016249 locus=Lus10016249.g ID=Lus10016249.BGIv1.0 annot-version=v1.0 MSSESSSDRASRRTRIISNHLKRSVDQNPPGDSIRSNVCLSYSPPELHEKIEFDVKRMRELLDVHNLKERDWLFGLMTQSELFRGSGKEFVMPDFNQTKE QQREATMKRIEYLKERGAFESWFATRGPETELRRLALAETLGVFDQSLSIMVGVHFFLWGGAIEFLGTKRHHDKWLRDTETYRTKGCFAMTELGHGSNVR AIETVATYDSNTNEFAINTPCESAQKYWIGGAANHATHTVVFSQLNINGRNEGVHAFIVQIRDDYGNICSNIRIADCGHKIGLNGVDNGRIWFDNVRIPR ENLLNSVADVMPDGRYESPIQDPDQRFAAFMAPLTSGRVIISSAAIYSAQIGLAIAIRYALSRRAFSFTPNGPEVLLLDYRSHQRRLLPLLAKTYAVTFA RNYLKKIYVKRTPESLKLVHVVSSGFKAALTWHNMRTLQECRESCGGQGLKTENQVGHLKGEYDVQSTFEGDNNVLMQQVSKALLGEYIAANKKKNKAFS KGLRLEHMNEPLPVIPSQLTSDTLRSSHFQISALRLRERDLLNRFAAEMSQHRSKGVNKDYAFALGYQLAEDLGRAYSDRIIYESFVEVEGAVSPSPLKE VLGQLRSLYALTSMDEDAAFLRYGYLTTANAASVRAEVAKLCCELRPHALGLVGSFGIPSGFLSPIAFDWIQSNSWPSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06290		ATACX3, ACX3	acyl-CoA oxidase 3 (.1)		Lus10016249 [exp]	0	1
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10002663 [exp]	1.0	0.9633
AT2G03760		AtSOT12, AtSOT1...	ARABIDOPSIS THALIANA SULFOTRAN...		Lus10031623 [exp]	1.4	0.9575
AT3G10120			unknown protein		Lus10027167 [exp]	2.4	0.9561
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10002661 [exp]	2.6	0.9501
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10002075 [exp]	3.5	0.9554
AT1G72230			Cupredoxin superfamily protein...		Lus10027043 [exp]	3.9	0.9552
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10004670 [exp]	5.5	0.9551
AT3G19850			Phototropic-responsive NPH3 fa...		Lus10030554 [exp]	5.7	0.9438
AT1G54650			Methyltransferase family prote...		Lus10006576 [exp]	7.7	0.9397
AT2G17080			Arabidopsis protein of unknown...		Lus10025120 [exp]	9.0	0.9400

Compare expression of checked genes

Lus10016249 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.