Plant FIBer expression Database

Lus10016252 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G02955 148 / 2e-41 MEE12 maternal effect embryo arrest 12 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034719
[exp]
244 / 1e-78 AT2G02955 370 / 5e-121 maternal effect embryo arrest 12 (.1)
Lus10021646
[exp]
201 / 4e-61 AT2G02955 442 / 4e-147 maternal effect embryo arrest 12 (.1)
Lus10004454
[exp]
152 / 2e-44 AT2G02955 204 / 8e-60 maternal effect embryo arrest 12 (.1)
Lus10030476
[exp]
0 / 1 AT2G02955 79 / 5e-16 maternal effect embryo arrest 12 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G169500
[exp]
201 / 9e-61 AT2G02955 513 / 5e-174 maternal effect embryo arrest 12 (.1)
PFAM info
Representative CDS sequence
>Lus10016252 pacid=23142716 polypeptide=Lus10016252 locus=Lus10016252.g ID=Lus10016252.BGIv1.0 annot-version=v1.0
ATGGTTTGGTTTAGGAGTTTGAGGAAAGCGATACCTCTGGATTATTCTCTGGCTATATGTTTCTTGGCTTCCCATGTTGCGCAAGAAGCAATTCTACCGA
CGGACATAGTGAAGTGGTCAGTTGAAGGCAAGATCCCCTATTTTGCTGCTCATATTGAAATCGACAAGCGTTTCGAAGGTCCCTCGCTTGCCTGTCCAAT
AAGCTCAGCACTAATGTTTAGGCCTTCGCAGCCAGTTCCAGTCCAGAAGTTGGAAGCAACGGCTGCTATTATAGCCGAGTCAATAGGTTTGAGTCTGCCT
TCGGTAAACTTCCATGCCATAGCGTTTCGGTATGTCAATGAACAGTCTCTTCTTCCCACTGAGAAGATTCTTGTATATGCCCGTGACATATATGCATGGT
CAATGCCTCCTGATTTATGGTTATCAGAAAATAAGCGAAGACTTCCCGCTCGTCAATTAGAATTCTCTATAAATTGCATGGTTTTGGTGCATGAGAAAGG
AGCTTATCCAAGTGTGCACCGACGACTCATACGTCAGAGCTCGACTCTGAGCAATTTCTGCACAAACTTGAAACAGAGTATAGCAAGATTGGAGGACCAT
GTGAGTTTTCCGAAGACTTGA
AA sequence
>Lus10016252 pacid=23142716 polypeptide=Lus10016252 locus=Lus10016252.g ID=Lus10016252.BGIv1.0 annot-version=v1.0
MVWFRSLRKAIPLDYSLAICFLASHVAQEAILPTDIVKWSVEGKIPYFAAHIEIDKRFEGPSLACPISSALMFRPSQPVPVQKLEATAAIIAESIGLSLP
SVNFHAIAFRYVNEQSLLPTEKILVYARDIYAWSMPPDLWLSENKRRLPARQLEFSINCMVLVHEKGAYPSVHRRLIRQSSTLSNFCTNLKQSIARLEDH
VSFPKT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G02955 MEE12 maternal effect embryo arrest ... Lus10016252
[exp]
0 1
AT3G23820 GAE6 UDP-D-glucuronate 4-epimerase ... Lus10022552
[exp]
16.7 0.7946
AT5G11590 AP2_ERF DREB3, TINY2 TINY2, Integrase-type DNA-bind... Lus10025834
[exp]
43.8 0.7679
AT4G13840 HXXXD-type acyl-transferase fa... Lus10016638
[exp]
103.9 0.7272
AT5G07475 Cupredoxin superfamily protein... Lus10012165
[exp]
118.4 0.7129
AT2G34930 disease resistance family prot... Lus10016325
[exp]
157.8 0.7103

Lus10016252 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.