Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58030 307 / 8e-101 RING/U-box superfamily protein (.1.2.3.4) AT2G42030 239 / 2e-74 RING/U-box superfamily protein (.1) AT2G44410 127 / 1e-32 RING/U-box superfamily protein (.1) AT2G23780 116 / 6e-30 RING/U-box superfamily protein (.1) AT1G19310 115 / 1e-29 RING/U-box superfamily protein (.1) AT1G74990 106 / 3e-27 RING/U-box superfamily protein (.1) AT4G27470 106 / 4e-26 ATRMA3 RING membrane-anchor 3 (.1) AT4G28270 94 / 2e-22 ATRMA2 RING membrane-anchor 2 (.1) AT4G03510 94 / 7e-22 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) AT2G26350 53 / 2e-07 PEX10, ATPEX10 peroxin 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029292 [exp] 741 / 0 AT3G58030 374 / 6e-127 RING/U-box superfamily protein (.1.2.3.4) Lus10021063 [exp] 480 / 1e-168 AT3G58030 362 / 1e-122 RING/U-box superfamily protein (.1.2.3.4) Lus10004162 [exp] 470 / 6e-165 AT3G58030 367 / 3e-124 RING/U-box superfamily protein (.1.2.3.4) Lus10016303 [exp] 121 / 8e-32 AT1G19310 268 / 2e-91 RING/U-box superfamily protein (.1) Lus10010791 [exp] 120 / 3e-31 AT1G19310 266 / 1e-90 RING/U-box superfamily protein (.1) Lus10016796 [exp] 111 / 4e-28 AT2G23780 242 / 3e-81 RING/U-box superfamily protein (.1) Lus10022492 [exp] 110 / 7e-28 AT2G23780 241 / 1e-80 RING/U-box superfamily protein (.1) Lus10011184 [exp] 102 / 1e-24 AT4G03510 164 / 5e-50 RING membrane-anchor 1 (.1.2) Lus10018489 [exp] 101 / 2e-24 AT4G03510 159 / 7e-48 RING membrane-anchor 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G058300 [exp] 427 / 2e-147 AT3G58030 331 / 7e-110 RING/U-box superfamily protein (.1.2.3.4) Potri.006G193600 [exp] 414 / 3e-142 AT3G58030 389 / 2e-132 RING/U-box superfamily protein (.1.2.3.4) Potri.001G229600 [exp] 156 / 8e-43 AT2G44410 191 / 6e-56 RING/U-box superfamily protein (.1) Potri.009G023300 [exp] 150 / 1e-40 AT2G44410 192 / 3e-56 RING/U-box superfamily protein (.1) Potri.007G031600 [exp] 124 / 4e-33 AT2G23780 227 / 4e-75 RING/U-box superfamily protein (.1) Potri.005G127900 [exp] 121 / 7e-32 AT2G23780 234 / 3e-78 RING/U-box superfamily protein (.1) Potri.002G133000 [exp] 118 / 6e-31 AT1G19310 244 / 5e-82 RING/U-box superfamily protein (.1) Potri.014G040400 [exp] 117 / 3e-30 AT1G19310 226 / 4e-75 RING/U-box superfamily protein (.1) Potri.013G132300 [exp] 100 / 1e-23 AT4G03510 191 / 2e-60 RING membrane-anchor 1 (.1.2) Potri.004G042700 [exp] 98 / 3e-23 AT4G03510 157 / 1e-47 RING membrane-anchor 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10016255 pacid=23142637 polypeptide=Lus10016255 locus=Lus10016255.g ID=Lus10016255.BGIv1.0 annot-version=v1.0 ATGGGGGAGGAAGCACCTGATGCAATGAACCTCGACTTGAATCTTGGTCCTGGTCCTGACTCGGAAGCAGCTTCTTTACCTAGTGAAGGTGTGAACTTGG TCGATTGGATTACCGATGAACCGATGAATGAGGACCCGATCCAAAGAATTAGGGAAGGTTTAAGAGTTCGAGCTAGGCAACGATGGAGGTGGCGACAAGT CCAGTTCCCGCACGAGAGGCAAACTCAGCTTTCCGTGGAGTTAAATCAGTTGATCGGCGATTCCGGAAGTCTGGGGGGCTTACAGGCTGGCGAGGGTAGT GTAGCAGCGGAAGCACGGACGAACGAAGAAGAGACTAAAATGTGTGAAAATAACGGATTTCTAGAAGATCAAGTGTTGGAGAAGAAGGATGATGTTGAGA AAGGGAATGCCACTGATGGAGGGAGTTTCTTCGATTGCAATATTTGCTTCGACTTGGCTTCGGATCCGGTTGTTACCTGCTGCGGCCATCTATTTTGCTG GGCGTGCCTATATAGATGGTTACATATCCATTCGGATGCAAAAGAATGCCCTGTCTGCAAAGGAGAGGTCACCATCAAGAATGTTACTCCAATATACGGA CGTGGCAATAAGAATTTACGTCCACCTGAAGAGGACGAGGCTCTCGATATCCCGAGCAGGCCTCAGGGAAGGCGAGTCGAGAGTCTGAGGCAGACTCTTC AGAGGAATCAGTTTAACTTCCCAATGGAAGAGGTGATTCGACGCCTCGGAAGTAGGCTCGAGTTGATGCAAGAGTTGGCTCCATCGTCTCAAGAACCGAG TGCTGGTCGTGCCGCTGTGGATAGGGATTCGTTTCTTAATAGGATAATGACACTTAGGGGATTGCGTGCCGAGCAGAGTTCAGTTCCAAATCCTAACGAG ATAGTGGACTCGACACAAAGCGGAACGAGCAGTCCAGAGGGAGGGAGAGCCCGCCGGATTCATTCTTCTTTGTTGCTCCGGAGGTCCCAAGCACATACTC ATAGCCATAGGCCTTCAGCTCACACTATGCTTTCAACGGTGTTGACTAATTCAGATAGAATGGTTGACCTTCTCTTGAACAATACAATGACAAGGAATCA GGACCAAGCTGTCGACGACAGGGATTCTTTCTCCAGCATTGCTGCAGTTATAAACTCGGAGAGTCAAATGGATACTGCTGTAGAAATCGATTCCATGGTC TCTCTTTCAACGTCCTCTTCCAGGAGAAGAAACGATAGCTCGAGAGCCTCCGATGTTGACAGCGGGGATTCTCGTGCTCCTAGGAGGAGGAGGTTAAATT AA
AA sequence Show only first row Show all	>Lus10016255 pacid=23142637 polypeptide=Lus10016255 locus=Lus10016255.g ID=Lus10016255.BGIv1.0 annot-version=v1.0 MGEEAPDAMNLDLNLGPGPDSEAASLPSEGVNLVDWITDEPMNEDPIQRIREGLRVRARQRWRWRQVQFPHERQTQLSVELNQLIGDSGSLGGLQAGEGS VAAEARTNEEETKMCENNGFLEDQVLEKKDDVEKGNATDGGSFFDCNICFDLASDPVVTCCGHLFCWACLYRWLHIHSDAKECPVCKGEVTIKNVTPIYG RGNKNLRPPEEDEALDIPSRPQGRRVESLRQTLQRNQFNFPMEEVIRRLGSRLELMQELAPSSQEPSAGRAAVDRDSFLNRIMTLRGLRAEQSSVPNPNE IVDSTQSGTSSPEGGRARRIHSSLLLRRSQAHTHSHRPSAHTMLSTVLTNSDRMVDLLLNNTMTRNQDQAVDDRDSFSSIAAVINSESQMDTAVEIDSMV SLSTSSSRRRNDSSRASDVDSGDSRAPRRRRLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58030			RING/U-box superfamily protein...		Lus10016255 [exp]	0	1
AT1G48840			Plant protein of unknown funct...		Lus10020973 [exp]	2.8	0.8814
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Lus10019260 [exp]	4.2	0.8572
AT3G11890			Sterile alpha motif (SAM) doma...		Lus10017225 [exp]	4.5	0.8370
AT1G12450			SNARE associated Golgi protein...		Lus10006674 [exp]	4.9	0.8486
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Lus10011546 [exp]	5.1	0.8573
AT3G59380		FTA, PLP, ATFTA...	PLURIPETALA, farnesyltransfera...		Lus10000763 [exp]	5.5	0.8537
AT3G59910			Ankyrin repeat family protein ...		Lus10010581 [exp]	5.7	0.8544
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10013216 [exp]	5.7	0.8315
AT1G80400			RING/U-box superfamily protein...		Lus10023112 [exp]	7.2	0.8342
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10012487 [exp]	7.9	0.8256

Compare expression of checked genes

Lus10016255 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.