Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27660 107 / 2e-25 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G44370 96 / 5e-23 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G44380 93 / 5e-22 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G17740 84 / 7e-19 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G40590 82 / 4e-18 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G37820 77 / 9e-16 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G28270 69 / 2e-13 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G43520 68 / 5e-13 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G02610 69 / 8e-13 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G02640 62 / 1e-10 Cysteine/Histidine-rich C1 domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004165 [exp] 273 / 3e-90 AT2G27660 95 / 3e-21 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10021061 [exp] 250 / 1e-81 AT2G27660 98 / 3e-22 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10036411 [exp] 97 / 4e-22 AT4G12790 444 / 5e-156 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10003919 [exp] 62 / 5e-11 AT2G44380 179 / 2e-56 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10037470 [exp] 62 / 1e-10 AT2G44380 177 / 5e-52 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10028723 [exp] 58 / 2e-09 AT1G20990 269 / 9e-89 Cysteine/Histidine-rich C1 domain family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G057900 [exp] 211 / 3e-65 AT2G27660 145 / 2e-37 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.012G038400 [exp] 109 / 2e-27 AT2G27660 218 / 3e-65 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.001G229500 [exp] 103 / 2e-25 AT2G27660 171 / 5e-48 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.001G229900 [exp] 77 / 3e-16 AT2G28270 223 / 2e-72 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.005G258800 [exp] 64 / 3e-11 AT1G20990 270 / 1e-89 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G047300 [exp] 63 / 9e-11 AT5G22355 234 / 1e-67 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G044800 [exp] 63 / 1e-10 AT5G22355 260 / 3e-77 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G047200 [exp] 60 / 9e-10 AT5G22355 242 / 3e-70 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G047000 [exp] 59 / 3e-09 AT5G22355 237 / 1e-68 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G044600 [exp] 58 / 3e-09 AT5G22355 260 / 7e-77 Cysteine/Histidine-rich C1 domain family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10016256 pacid=23142673 polypeptide=Lus10016256 locus=Lus10016256.g ID=Lus10016256.BGIv1.0 annot-version=v1.0 ATGGCCAATGACGACGATCCACCAATTCAACACTTCACCCACCAACACCCACTGCACCGATCAATCTCGCCGGGGAACATCGTCTGCAACGGCTGCAACT TAGGTATCACAACAGGGAAAGAACACTACACCTGCAAATCCTGCCATTCATTCTCCCTCCACAAGCTTTGCTTCCACATGCCACAATCCACCGCCCACCC TGCTCACCCTAACTCCAAACTCACCCTCTCCGTTGCCACAGCCTCCGCCGGCGGAGTAAGGTGCAGGGCCTGCACGAAGGCCATCTCAGGCTTCTACTAC GGCGTCGGGAGCAGCTGCTATCACAACCTCTGTTTGGCTCTGCCGCTCGCCGTCATGATCTCCGGCCATCCGCATCCGCTCAAGATCCATTTCAGCCCGC CGTACGATTTCGGATGCGATGTCTGCCGGAGACCTAGCTACAAGGGGTGGCTGTACCGGTGTCGGTTCTGTGAATTCGATGCGCACATTACCTGCGCGAT CTCGCACAGGATTACGGCGGAGGAGAATCGCCGGATCTCGAGCTCGGGACACGAGATTCTGCACCTTCTTCAGTTGAGGCTCGGAATTGATCGGAAAATT GGGGAGGCGGGGGCGGATTTGAAGGCGGAGATGGTGTCGTCCCAGACGGAGCCGCTGATGTCGTGTAGTCTGCCGTCAGATTCAGTGGAGAAGTCACCGG TTTTGGGATATAGGGTTTCGGGATCTAGAGTTTCGTCGGTGACGGAGATTCCTAGCTATCAGTTTAGTGATATGTGCTTCTCGATCGATCTTCACAAGTC TTATTCGGACGGAAACGACGTAGTAGCGGGAGTAGGAAATCAGGTGGCGAGTGATGGCGGCGAGAGGAAGGCGGCTGCGGTGATGGCGGTTGATTCGCCT TGTCTTAATGTGTTCGTGTTGGAGGCGTCTATTGATGTTTTGTTGCTTGTGTCGGGAGTATAA
AA sequence Show only first row Show all	>Lus10016256 pacid=23142673 polypeptide=Lus10016256 locus=Lus10016256.g ID=Lus10016256.BGIv1.0 annot-version=v1.0 MANDDDPPIQHFTHQHPLHRSISPGNIVCNGCNLGITTGKEHYTCKSCHSFSLHKLCFHMPQSTAHPAHPNSKLTLSVATASAGGVRCRACTKAISGFYY GVGSSCYHNLCLALPLAVMISGHPHPLKIHFSPPYDFGCDVCRRPSYKGWLYRCRFCEFDAHITCAISHRITAEENRRISSSGHEILHLLQLRLGIDRKI GEAGADLKAEMVSSQTEPLMSCSLPSDSVEKSPVLGYRVSGSRVSSVTEIPSYQFSDMCFSIDLHKSYSDGNDVVAGVGNQVASDGGERKAAAVMAVDSP CLNVFVLEASIDVLLLVSGV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27660			Cysteine/Histidine-rich C1 dom...		Lus10016256 [exp]	0	1
AT2G37980			O-fucosyltransferase family pr...		Lus10028253 [exp]	8.2	0.7109
AT1G02790		PGA4	polygalacturonase 4 (.1)		Lus10003782 [exp]	9.2	0.7139
AT4G14615			unknown protein		Lus10021896 [exp]	11.0	0.6881
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10004215 [exp]	12.4	0.6993
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10025105 [exp]	17.5	0.6728
AT5G18960	FAR1_related	FRS12	FAR1-related sequence 12 (.1)		Lus10023137 [exp]	17.7	0.6944
AT5G27470			seryl-tRNA synthetase / serine...		Lus10010212 [exp]	24.8	0.6045
AT3G15280			unknown protein		Lus10009211 [exp]	25.4	0.5457
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10027725 [exp]	27.3	0.6596
					Lus10043281 [exp]	33.3	0.6413

Compare expression of checked genes

Lus10016256 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.