Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06740 618 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 348 / 4e-110 Concanavalin A-like lectin protein kinase family protein (.1) AT5G03140 345 / 1e-108 Concanavalin A-like lectin protein kinase family protein (.1) AT5G10530 337 / 5e-106 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 327 / 4e-102 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 321 / 8e-100 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 321 / 1e-99 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 315 / 2e-97 Concanavalin A-like lectin protein kinase family protein (.1) AT1G15530 311 / 2e-96 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 304 / 2e-93 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004166 [exp] 682 / 0 AT5G06740 682 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10021060 [exp] 654 / 0 AT5G06740 667 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029290 [exp] 538 / 0 AT5G06740 213 / 3e-63 Concanavalin A-like lectin protein kinase family protein (.1) Lus10036986 [exp] 494 / 1e-168 AT5G06740 456 / 8e-155 Concanavalin A-like lectin protein kinase family protein (.1) Lus10028699 [exp] 393 / 8e-127 AT5G06740 455 / 1e-151 Concanavalin A-like lectin protein kinase family protein (.1) Lus10009423 [exp] 393 / 3e-126 AT5G06740 446 / 2e-147 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029555 [exp] 375 / 1e-120 AT5G10530 687 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004277 [exp] 362 / 8e-116 AT5G10530 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020456 [exp] 360 / 2e-114 AT5G10530 519 / 1e-176 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G045000 [exp] 640 / 0 AT5G06740 702 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G193000 [exp] 622 / 0 AT5G06740 688 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G455500 [exp] 389 / 1e-125 AT5G06740 416 / 1e-136 Concanavalin A-like lectin protein kinase family protein (.1) Potri.011G146500 [exp] 377 / 2e-121 AT5G06740 411 / 5e-135 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G368300 [exp] 367 / 2e-117 AT5G55830 853 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 367 / 3e-117 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.011G093700 [exp] 364 / 8e-116 AT5G55830 849 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004300 [exp] 362 / 1e-115 AT5G10530 743 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004500 [exp] 360 / 6e-115 AT5G10530 725 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.004G209300 [exp] 360 / 2e-114 AT5G06740 368 / 3e-118 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10016257 pacid=23142674 polypeptide=Lus10016257 locus=Lus10016257.g ID=Lus10016257.BGIv1.0 annot-version=v1.0 ATGGTGGCCACTCTGAAATTGTACATTGAAGATCTCAAATCTGGAAGGCTAAAGTTTCACTATGGCACGATTAACAAGAGGTACCTTGTTGGAGAGTTTA CAGAGGAAATGATGCAGCAAGCTAATCCTCCATTGAAGCTTGCAGCTTCCAAATCCATTGGAATCATCATCTTCTTCTTCGTCATTACATCTTGTTCCCC AGTTTGTTGCCTTTACTTCAACTACACAAACTTCCCCGACAACTCGACCAATGATTTCATTCGAACCAATGCCTACATAACCGCCAACACGATCCAGATC ACCCCCGATTTCCTGACGAACCAGTCCGGCCGAATCTTCCACAACCATCGCTTCCGGCTCTACAACTCCGGTGGTGGCCGTAGAGCATCATTCGACACGA AATTCACCCTCCAAATCAACCCGAAAACTCGACCTTCAGGGGAAGGCTTGGCCTTCATCCTGACTGGAAACACAGCCCTGCCAGTCAACAGCTCAGGTCA GTGGCTCGGGATTGCTAACTCCATTGCCAGCCGATTTTCTACCAAGATCGTAGCTGTCGAATTCGATACCAGGAAGAGTTACCCGGATGACTTGGACGAC AACCATGCCGGATTGGACATCAACGATGTTTACTCGATACGTCAGGAATCCCTGTCAGCTTTCAGGATCAATCTCTCTTCCTCCGATGTTGTCACAGCTC GAATTCGGTACGATGGATACACTCTGATGGTTTTCGTGAGTCTTCCGGATATGAGACAGGAACGACTTGTGATTTCTCATCAGATCGACCTCTCGGATCA TCTTCCCGAAGTTGTTCATGTAGGATTTTCAGGATCCACTAGCCAATTCGTTCAGCAGAACTGCATCCTGTCATGGGAATTTTCAGGTTCTGATATTAGT AGTAGTGAACGTGGTTGGTGGGTTTGGGTTGTAATTTCGGTATCGGTTATGGGTTTAATCGTTGGGGGAGCCGGGTTCATCTACCGGGGAAGGAAACTAG CTAGGGAGATGCGTAAAGTGGAAGATGAAGATGATGACTGCGAAGATGCTCATCCGAGTGTTGAAGAGGCGATTCGAGGGTCTTCCACGGCTCCTAAGAA GTTTAAACTCGACGAGCTTAGGGATGCAACCGACTATTTCGATTCCAAGAACATGCTCGGAAGAGGCGGATTTGGTACCGTTTACAAAGGAATTCTCGGA AATGGGGAGGTTGTTGCAGTGAAGAAAGTCTCCGAGGGGACAAGTCAAGGGAAGCAGGAATTCGTCGCAGAGGTCACGACGATCGGCAATCTTCGTCACA AGAATCTAGTGAAGCTAATCGGATGGGCACGCGAAAGGTGCGAATACCTTCTAGTTTACGAATACATGCCCAACGGAAGCCTCGATAAGTTCATTTTCGC GCCACGATCATCGTCGCCAATAATCCTGAGCTGGGGAACAAGACTACGCATAATAACTGGAATAGCGCAGGCGGTAGAGTACCTTCACAACGGCTGCGAT CGGAAGGTCCTCCATAGAGACATCAAGGCTAGCAACGTTATGATCGACTCGAACTTCGACGCCAGACTTGGAGATTTCGGTCTGGCCAGGACCATTGCCC AGGCCGATCAGACCCACCACTCTACCAAGGCATTAGCCGGAACCCCTGGGTACATGGCGCCCGAGCTTTTCCTCACAGGAAGGTCTACACCGGAGACAGA TGTTTACGGATTCGGAATCCTAGTCCTTGAAATTGTTTGTGGGAAGAAACCGGCCGGAGGAGGACCGGGAGGCCAGTTGGACCGAGATGATAACTATGCT AGCAACATTGTGAAGTGGGTTTGGGAGCTTTACGGGGCGGGGAGACTAATCGATGCGGCTGATCGTAGAATGATGAGGGATTTCGAGGACGAAAAATTAC AGAATGTGCTTACTTTGGGGTTGAGTTGTTGCCATCCTGACCCGTACGGAAGGCCTTCCATGAAAACTGTTCTTCAGGTTCTGACAGGAGAAGTTGCAGC CGTACCTGAAGTTCCCCTGGATAGGCCTGCCTTCACTTGGCCGTCTGTCGCTCCGTGTTTTGAAGATCGGCGATCCATGACAGGTAGCCAATCGTTTACA GAGATTACTGGGAGATGA
AA sequence Show only first row Show all	>Lus10016257 pacid=23142674 polypeptide=Lus10016257 locus=Lus10016257.g ID=Lus10016257.BGIv1.0 annot-version=v1.0 MVATLKLYIEDLKSGRLKFHYGTINKRYLVGEFTEEMMQQANPPLKLAASKSIGIIIFFFVITSCSPVCCLYFNYTNFPDNSTNDFIRTNAYITANTIQI TPDFLTNQSGRIFHNHRFRLYNSGGGRRASFDTKFTLQINPKTRPSGEGLAFILTGNTALPVNSSGQWLGIANSIASRFSTKIVAVEFDTRKSYPDDLDD NHAGLDINDVYSIRQESLSAFRINLSSSDVVTARIRYDGYTLMVFVSLPDMRQERLVISHQIDLSDHLPEVVHVGFSGSTSQFVQQNCILSWEFSGSDIS SSERGWWVWVVISVSVMGLIVGGAGFIYRGRKLAREMRKVEDEDDDCEDAHPSVEEAIRGSSTAPKKFKLDELRDATDYFDSKNMLGRGGFGTVYKGILG NGEVVAVKKVSEGTSQGKQEFVAEVTTIGNLRHKNLVKLIGWARERCEYLLVYEYMPNGSLDKFIFAPRSSSPIILSWGTRLRIITGIAQAVEYLHNGCD RKVLHRDIKASNVMIDSNFDARLGDFGLARTIAQADQTHHSTKALAGTPGYMAPELFLTGRSTPETDVYGFGILVLEIVCGKKPAGGGPGGQLDRDDNYA SNIVKWVWELYGAGRLIDAADRRMMRDFEDEKLQNVLTLGLSCCHPDPYGRPSMKTVLQVLTGEVAAVPEVPLDRPAFTWPSVAPCFEDRRSMTGSQSFT EITGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06740			Concanavalin A-like lectin pro...		Lus10016257 [exp]	0	1
AT5G17000			Zinc-binding dehydrogenase fam...		Lus10004379 [exp]	2.0	0.9671
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10008090 [exp]	2.8	0.9468
AT2G30140			UDP-Glycosyltransferase superf...		Lus10042261 [exp]	5.1	0.9606
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10039348 [exp]	5.3	0.9537
AT1G78780			pathogenesis-related family pr...		Lus10042792 [exp]	6.5	0.9469
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10005951 [exp]	6.5	0.9550
AT4G37990		CAD-B2, ATCAD8,...	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10025706 [exp]	8.1	0.9520
AT5G39160			RmlC-like cupins superfamily p...		Lus10042517 [exp]	8.6	0.9068
AT5G10530			Concanavalin A-like lectin pro...		Lus10004277 [exp]	8.8	0.9386
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10021102 [exp]	10.7	0.9477

Compare expression of checked genes

Lus10016257 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.