Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42080 193 / 4e-61 Chaperone DnaJ-domain superfamily protein (.1) AT3G58020 131 / 5e-37 Chaperone DnaJ-domain superfamily protein (.1) AT2G18465 84 / 5e-19 Chaperone DnaJ-domain superfamily protein (.1) AT1G59725 49 / 1e-06 DNAJ heat shock family protein (.1) AT3G08910 46 / 9e-06 DNAJ heat shock family protein (.1) AT4G28480 46 / 1e-05 DNAJ heat shock family protein (.1.2) AT1G10350 46 / 1e-05 DNAJ heat shock family protein (.1) AT5G01390 45 / 2e-05 DNAJ heat shock family protein (.1.2.3.4) AT5G25530 45 / 3e-05 DNAJ heat shock family protein (.1) AT2G20560 45 / 3e-05 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029287 [exp] 406 / 3e-145 AT2G42080 206 / 5e-66 Chaperone DnaJ-domain superfamily protein (.1) Lus10020871 [exp] 94 / 7e-23 AT2G18465 115 / 1e-30 Chaperone DnaJ-domain superfamily protein (.1) Lus10033506 [exp] 86 / 7e-20 AT2G18465 103 / 3e-26 Chaperone DnaJ-domain superfamily protein (.1) Lus10013280 [exp] 50 / 6e-07 AT1G10350 422 / 5e-148 DNAJ heat shock family protein (.1) Lus10030803 [exp] 47 / 6e-06 AT1G10350 434 / 2e-153 DNAJ heat shock family protein (.1) Lus10017687 [exp] 47 / 8e-06 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10013981 [exp] 47 / 9e-06 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10015402 [exp] 46 / 1e-05 AT2G20560 483 / 7e-173 DNAJ heat shock family protein (.1) Lus10027803 [exp] 46 / 1e-05 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G308900 [exp] 87 / 3e-20 AT2G18465 149 / 2e-43 Chaperone DnaJ-domain superfamily protein (.1) Potri.019G010000 [exp] 86 / 6e-20 AT2G18465 150 / 4e-44 Chaperone DnaJ-domain superfamily protein (.1) Potri.016G045401 [exp] 71 / 3e-15 AT2G42080 50 / 2e-07 Chaperone DnaJ-domain superfamily protein (.1) Potri.011G057601 [exp] 49 / 1e-06 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 47 / 4e-06 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 47 / 5e-06 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.010G035000 [exp] 47 / 6e-06 AT1G10350 429 / 1e-151 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 46 / 1e-05 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 45 / 2e-05 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.008G194000 [exp] 45 / 2e-05 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10016258 pacid=23142671 polypeptide=Lus10016258 locus=Lus10016258.g ID=Lus10016258.BGIv1.0 annot-version=v1.0 ATGAATTTGGCAGCTAAATCCGCCATTTACAACAATCTTAGCAGCAATTTCCAGCTCCGTGCCGCCGCCCTGTTCCATTTTTCCCCCGTCCTTGAACGCA AACGCCGCGGCAGCTCCTATTCCGGCTACTCCAGACCAAATTTTAGTTCGAGGAGGAACAGGAAGCTACACGGGAAGGACGACTTACTACGCAATCTTAG GGCTTATGCAGATACCTTATTTCAGGGTTGGAAAGATGAACGTGAAGAGGAAGGTCCATCTTCAAATAAAGAACCGTCTTGGTTTAGAAAGCAATACTCC AAGGGACCCAAAAACACCAATGCTAGAAGCAGCCGCTGGAACAAAAGAGGCTTTGATTTCTGCGATGACGACATCGAAGTCGAGACCATTTTCCGCTCCG CATTCGGTGGCAGTACCCGACACTTCTACTGGTCCTTCATAAACGACGAGCAACCTCAGTGGAAGAGATCTTCATCTTGGAATTCGAGGAGGTTTAGATT TCGAGAGGAGGACGATTATGAATCCGAATCTGATAGTGGTGGTCCCATGGTAAGTTTGGTTTCCGAAAGGCGTACCCTCGGACTACATCCTTCCGGTCCA CTGAAGCTCGAAGACGTGAAATCCGCGTACCGGACATGCGCGATGAAATGGCACCCGGATCGTCACCTGGGTTCTTCCAAGGCGGTTGCAGAGGAGAAGT TCAAGGTCTGTAGTGCTGCGTATGAAACATTGTGTACCAAATTGGCTGCTGCGGCTTAG
AA sequence Show only first row Show all	>Lus10016258 pacid=23142671 polypeptide=Lus10016258 locus=Lus10016258.g ID=Lus10016258.BGIv1.0 annot-version=v1.0 MNLAAKSAIYNNLSSNFQLRAAALFHFSPVLERKRRGSSYSGYSRPNFSSRRNRKLHGKDDLLRNLRAYADTLFQGWKDEREEEGPSSNKEPSWFRKQYS KGPKNTNARSSRWNKRGFDFCDDDIEVETIFRSAFGGSTRHFYWSFINDEQPQWKRSSSWNSRRFRFREEDDYESESDSGGPMVSLVSERRTLGLHPSGP LKLEDVKSAYRTCAMKWHPDRHLGSSKAVAEEKFKVCSAAYETLCTKLAAAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42080			Chaperone DnaJ-domain superfam...		Lus10016258 [exp]	0	1
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Lus10038423 [exp]	1.7	0.9089
AT3G03690		UNE7	unfertilized embryo sac 7, Cor...		Lus10020316 [exp]	11.7	0.8964
AT1G80530			Major facilitator superfamily ...		Lus10017971 [exp]	11.7	0.8746
AT5G65160		TPR14	tetratricopeptide repeat 14, t...		Lus10016804 [exp]	14.4	0.8366
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10032190 [exp]	15.7	0.8808
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Lus10011572 [exp]	17.9	0.8608
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10009690 [exp]	20.2	0.8508
AT3G59110			Protein kinase superfamily pro...		Lus10001055 [exp]	21.2	0.8615
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10036039 [exp]	21.7	0.8571
AT3G55700			UDP-Glycosyltransferase superf...		Lus10004671 [exp]	22.6	0.8378

Compare expression of checked genes

Lus10016258 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.