Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10330 499 / 5e-180 Cyclin-like family protein (.1) AT2G41630 472 / 4e-169 TFIIB transcription factor IIB (.1) AT3G29380 240 / 2e-77 pBRP2 plant-specific TFIIB-related protein 2, Cyclin-like family protein (.1) AT3G57370 139 / 2e-38 Cyclin family protein (.1) AT4G36650 88 / 4e-19 ATPBRP plant-specific TFIIB-related protein (.1.2) AT4G10680 83 / 6e-19 transcription factor IIB (TFIIB) family protein (.1) AT5G39230 55 / 2e-09 TFIIB zinc-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035440 [exp] 505 / 0 AT3G10330 603 / 0.0 Cyclin-like family protein (.1) Lus10031055 [exp] 292 / 6e-99 AT3G10330 355 / 7e-124 Cyclin-like family protein (.1) Lus10031056 [exp] 91 / 6e-23 AT3G10330 109 / 7e-31 Cyclin-like family protein (.1) Lus10024022 [exp] 87 / 1e-18 AT4G36650 610 / 0.0 plant-specific TFIIB-related protein (.1.2) Lus10029285 [exp] 79 / 1e-18 AT3G10330 71 / 3e-16 Cyclin-like family protein (.1) Lus10041732 [exp] 85 / 6e-18 AT4G36650 605 / 0.0 plant-specific TFIIB-related protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G057100 [exp] 487 / 4e-175 AT3G10330 611 / 0.0 Cyclin-like family protein (.1) Potri.006G048400 [exp] 487 / 4e-175 AT3G10330 605 / 0.0 Cyclin-like family protein (.1) Potri.015G067500 [exp] 397 / 1e-139 AT3G10330 499 / 5e-180 Cyclin-like family protein (.1) Potri.017G093100 [exp] 269 / 4e-89 AT3G10330 333 / 1e-114 Cyclin-like family protein (.1) Potri.007G027600 [exp] 86 / 2e-18 AT4G36650 575 / 0.0 plant-specific TFIIB-related protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF08271 [flax] [poplar] TF_Zn_Ribbon TFIIB zinc-binding CL0065 [flax] [poplar] Cyclin PF00382 [flax] [poplar] TFIIB Transcription factor TFIIB repeat
Representative CDS sequence Show only first row Show all	>Lus10016260 pacid=23142677 polypeptide=Lus10016260 locus=Lus10016260.g ID=Lus10016260.BGIv1.0 annot-version=v1.0 ATGTCTGATGCTTACTACTGCTCAGACTGCAAGTGGCAAACGGAGGTGGTGCTCGATCAGTCGGCGGGGGATACGATCTGCAGTGAGTGCGGCCTTGTCC TCGACTCTCACTACATCGACGAGACGTCCGAGTGGAGGACTTTCGCCAACGACTACCTGGACAACGATCCCGTCCGTGTCGGAGGTCCAACCAACCCGCT GCTGGCCGGCGGCGGCTTTTTCACCGTGATCGCCAAGCCTAATGGTGCTTCGGGGGATTTTTTGTCGTCTACGCTGGGGAGGTTGCAGAATCGAGGTTCA AATTCTGATCGGAGGTTGATACTGGCGTTCAAGACTATTGGCACCATGGCTGATAGGTTGGGACTTGTTCCAACTATCAGGGACCGGGCAAATGAGATAT TCAAAAGTTTGGAGGATCAGTCTGGCAGAAGAAGAAAAAATCAGGATGCCTTACTGGCTGCTTGCCTCTACATTGCTTGTAAGCAAGAGGCCAAGTCGAC CCGGACTTTGAAGGAAATTTGTTCCGTTGCCAATGGAGCCACAGAGAAGGAAATTGGCAAAGCCAAAACTTACATAGTGAAACAGCTCCCGGGACTGGAG ACAGGCCAGTCAGTTGAAATGGGAACTACACATGCTGGAGACGTCATGAGGCGATTCTGCTCTCATCTTGGTATGACTCATCGAGCAATGAAAGCCGCCC AGGAGTCTGCTCAGAAGTCGGAAGAGTTTTACATAAGGAGGAGCCCGATATCTATCACAGCAGCAGTTATATACATCATAACGCAACTATCCGGTGACAA GAAAGCTCAAAGAGACAATAAGGAACTCGTACAACACATATCGAAGGCAACGGGTGTAGCTGAAGAGACGATAAGGAACTCGTACAAGGATCTGTATCCT CATGTGTCTAAGATCATACCTGGGTGGTATGCTAAGGAAGTGGATCTCAAGAACCTTTCCAGTCCTTAG
AA sequence Show only first row Show all	>Lus10016260 pacid=23142677 polypeptide=Lus10016260 locus=Lus10016260.g ID=Lus10016260.BGIv1.0 annot-version=v1.0 MSDAYYCSDCKWQTEVVLDQSAGDTICSECGLVLDSHYIDETSEWRTFANDYLDNDPVRVGGPTNPLLAGGGFFTVIAKPNGASGDFLSSTLGRLQNRGS NSDRRLILAFKTIGTMADRLGLVPTIRDRANEIFKSLEDQSGRRRKNQDALLAACLYIACKQEAKSTRTLKEICSVANGATEKEIGKAKTYIVKQLPGLE TGQSVEMGTTHAGDVMRRFCSHLGMTHRAMKAAQESAQKSEEFYIRRSPISITAAVIYIITQLSGDKKAQRDNKELVQHISKATGVAEETIRNSYKDLYP HVSKIIPGWYAKEVDLKNLSSP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10330			Cyclin-like family protein (.1...		Lus10016260 [exp]	0	1
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10021136 [exp]	6.2	0.7676
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Lus10000670 [exp]	11.0	0.6948
					Lus10030669 [exp]	20.0	0.6562
AT5G66390			Peroxidase superfamily protein...		Lus10041784 [exp]	28.6	0.7482
AT4G14990			Topoisomerase II-associated pr...		Lus10010445 [exp]	37.4	0.6645
AT2G23570		ATMES19	ARABIDOPSIS THALIANA METHYL ES...		Lus10000841 [exp]	42.4	0.6835
AT2G23560		ATMES7	ARABIDOPSIS THALIANA METHYL ES...		Lus10000840 [exp]	44.8	0.6847
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10000022 [exp]	47.1	0.6624
					Lus10007078 [exp]	87.6	0.6663
AT3G30280			HXXXD-type acyl-transferase fa...		Lus10034600 [exp]	113.5	0.6459

Compare expression of checked genes

Lus10016260 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.