Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42110 66 / 3e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029282 [exp] 172 / 7e-56 AT2G42110 82 / 1e-20 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G045700 [exp] 64 / 2e-13 AT2G42110 100 / 7e-28 unknown protein Potri.006G192500 [exp] 58 / 4e-11 AT2G42110 74 / 1e-17 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016261 pacid=23142653 polypeptide=Lus10016261 locus=Lus10016261.g ID=Lus10016261.BGIv1.0 annot-version=v1.0 ATGGACGCAAAGCTCGACCCTGCCTCCTCTCCACCACCCGCTGCCGCAGTTCAGCAGGTCAACAAGAGATCCTCCGACGAGCTGCTCCGCAAGTTCGCGG ATTCCGGCGATGAGGAGGAAAAGGCGGCGGCAGAGCATGCGTGGAAACGACGGCGAAGCAGCTCCAGGAAGAAGAAGACAGCGAGGAGTGTAGACGAAGA CGATGAAGGATACGAATTGGCAGTGTCAGCAGAGAGGCGATCGCTGCTCGCTGTATCGACGACGAGGAAGAAGTGGGCAGTGCTCCGCCGCGGCGGCAGG GCAGTTCTCCGCCGCGGCGGCAGAGGACGTGGCTGTAGTAACAAGTCCGTTCTCGTGTCCGTCATCGAAAAGACGTGGAGGAGGACGTTAGAAGGGGCGT CAAGGATGATACTGGAGAAGCAGCGTTGCAATCGCCACAGGCGTTTGATTAACGATGTTCTTGTCTATTAA
AA sequence Show only first row Show all	>Lus10016261 pacid=23142653 polypeptide=Lus10016261 locus=Lus10016261.g ID=Lus10016261.BGIv1.0 annot-version=v1.0 MDAKLDPASSPPPAAAVQQVNKRSSDELLRKFADSGDEEEKAAAEHAWKRRRSSSRKKKTARSVDEDDEGYELAVSAERRSLLAVSTTRKKWAVLRRGGR AVLRRGGRGRGCSNKSVLVSVIEKTWRRTLEGASRMILEKQRCNRHRRLINDVLVY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42110			unknown protein		Lus10016261 [exp]	0	1
AT2G42110			unknown protein		Lus10029282 [exp]	1.4	0.9371
					Lus10001684 [exp]	6.4	0.9398
AT5G03870			Glutaredoxin family protein (....		Lus10017029 [exp]	10.7	0.9261
AT5G13840		FZR3	FIZZY-related 3 (.1.2)		Lus10023401 [exp]	17.9	0.9159
AT1G23790			Plant protein of unknown funct...		Lus10013006 [exp]	18.7	0.8874
AT1G06660		JASON	JASON, unknown protein		Lus10020732 [exp]	21.9	0.9099
AT5G03870			Glutaredoxin family protein (....		Lus10021353 [exp]	22.2	0.9012
AT3G63430			unknown protein		Lus10024836 [exp]	25.7	0.8978
AT5G12360			unknown protein		Lus10039048 [exp]	26.6	0.9074
AT4G17000			unknown protein		Lus10010744 [exp]	26.7	0.9086

Compare expression of checked genes

Lus10016261 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.