Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42120 671 / 0 POLD2 DNA polymerase delta small subunit (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G045800 [exp] 696 / 0 AT2G42120 724 / 0.0 DNA polymerase delta small subunit (.1.2) Potri.006G192400 [exp] 676 / 0 AT2G42120 705 / 0.0 DNA polymerase delta small subunit (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF04042 [flax] [poplar] DNA_pol_E_B DNA polymerase alpha/epsilon subunit B
Representative CDS sequence Show only first row Show all	>Lus10016262 pacid=23142669 polypeptide=Lus10016262 locus=Lus10016262.g ID=Lus10016262.BGIv1.0 annot-version=v1.0 ATGAGAATGGACTCGAGCGAAGTTCTGCAGAGGAAGCAAGCAACCTACACTTGTCTGGATGAGACGTTTGAGATAAGAAACGAGAAGTACAGCGGGCAGC AGTACAGCCAAATCTACTTCGCTCGACTCCATGTTGCGAAGACCCTTCTCTACTCTCTCATCCCTCTCTGGAAGCCTCAAATCCCTGTTTGTACGGTTTT GAGTCTCGAAGAAGGCAAGGAATGCGTCATCGTTGGAACTTTGTACAAGAACATGAAACTCAAGCCTCGAATTCTTGATGAGTATTCTAAGGAGAGATCA GTGGTTCCGCTTGTTAAGCCACACAACTTCATGAGCTCGGATGACTATTTGATTTTGGAAGATGAGGGCGGCAGAGTTAAGCTTGATGGCGCTTTGCTTT TATCTTCAGTCTATGTCACAGGTGTAATTGTTGCGTTGCTTGGAAAGGAAACTACTAAGGGAGATTTCCTGGTTCACGAAATTCTTGAAGCTGGATTAGC TCCACAGATTGACCGGCCACTTAAATTAGGCGAGGACAAGTTTGTTCTTTTTGTTTCTGGGCTGGGTGTGGGGAACACGAAAGCAAATCCTCTCCAACTT CAGCTCCTTGTTGATCACATAACTGGCCATCTTGGAGATGAAAAGGAACAACGTATGGCTGCACAGATAGTTCATGTAGTGATTGCTGGAAATTCAGTGG AAATCCCTTCAGAGTTCCTTAACGGACAGAATTTGGGTTCGAGAGATCAATCAAAGCTGTATGAGCCAACCAAAGAGCTGGATATCTACTTGACCCAGAT TGCTGCAGGGCTACCTTTAGATATCATACCAGGACCCAAAGACCCTACCAACTTCGCATTGCCTCAGCAGCCTCTCCACAGATGCCTTTTCCCAAGCTCA AGCGCTTACAACACTTTCAGATCTTGTACAAATCCCCATTGCTTTGAACTTGATAAGATCAGATTTCTGGGAACATCGGGTCAGAACATTGAGGATATGG GGAAGTATTCGGAGGCAAAAGACGAGCTTGAATTCATGGAAAGAACGTTGAAGTGGAGGCATATGGCTCCAACAACACCTAATACTCTCGGATGTTATCC CTTCACTGATAGGGATCCTTTCCTCATCGATAGCTGTCCCCATGTATACTTTGCCGGCAATCAAGCTCACTACGGAACCAGCTTGTTAAATGGCCCCGAA GGACAGATTGTGCGGCTCATTTCCATACCCAAGTTCTGTGAGACTGGAGTTGCTGTTATGCTTAACTTGAGAAATCTGGAGTGCCACACTGTAAGCTTTG AAGCTGAGTTCAGCTGA
AA sequence Show only first row Show all	>Lus10016262 pacid=23142669 polypeptide=Lus10016262 locus=Lus10016262.g ID=Lus10016262.BGIv1.0 annot-version=v1.0 MRMDSSEVLQRKQATYTCLDETFEIRNEKYSGQQYSQIYFARLHVAKTLLYSLIPLWKPQIPVCTVLSLEEGKECVIVGTLYKNMKLKPRILDEYSKERS VVPLVKPHNFMSSDDYLILEDEGGRVKLDGALLLSSVYVTGVIVALLGKETTKGDFLVHEILEAGLAPQIDRPLKLGEDKFVLFVSGLGVGNTKANPLQL QLLVDHITGHLGDEKEQRMAAQIVHVVIAGNSVEIPSEFLNGQNLGSRDQSKLYEPTKELDIYLTQIAAGLPLDIIPGPKDPTNFALPQQPLHRCLFPSS SAYNTFRSCTNPHCFELDKIRFLGTSGQNIEDMGKYSEAKDELEFMERTLKWRHMAPTTPNTLGCYPFTDRDPFLIDSCPHVYFAGNQAHYGTSLLNGPE GQIVRLISIPKFCETGVAVMLNLRNLECHTVSFEAEFS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42120		POLD2	DNA polymerase delta small sub...		Lus10016262 [exp]	0	1
AT3G20070		TTN9	titan9 (.1.2)		Lus10026248 [exp]	1.4	0.9420
AT4G21070		ATBRCA1	ARABIDOPSIS THALIANA BREAST CA...		Lus10036151 [exp]	2.0	0.9427
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Lus10029476 [exp]	3.2	0.9245
AT1G77580			Plant protein of unknown funct...		Lus10029679 [exp]	3.7	0.9241
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Lus10006511 [exp]	5.7	0.9142
AT3G18520		HDA15, ATHDA15	histone deacetylase 15 (.1.2)		Lus10024919 [exp]	5.7	0.9227
AT1G78770		APC6	anaphase promoting complex 6 (...		Lus10030525 [exp]	6.7	0.9103
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Lus10041587 [exp]	8.5	0.9338
AT1G73450			Protein kinase superfamily pro...		Lus10031902 [exp]	8.9	0.8904
AT4G31880			unknown protein		Lus10017121 [exp]	9.0	0.9198

Compare expression of checked genes

Lus10016262 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.