Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42130 346 / 1e-120 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5) AT3G58010 336 / 2e-116 PGL34 plastoglobulin 34kD (.1) AT4G04020 49 / 2e-06 FIB fibrillin (.1) AT2G35490 47 / 8e-06 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT4G22240 41 / 0.0005 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012003 [exp] 474 / 4e-171 AT2G42130 383 / 3e-134 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5) Lus10004171 [exp] 407 / 3e-145 AT2G42130 378 / 3e-133 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5) Lus10021055 [exp] 290 / 1e-98 AT2G42130 286 / 1e-96 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5) Lus10001099 [exp] 56 / 1e-08 AT4G22240 362 / 5e-126 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10014790 [exp] 55 / 1e-08 AT4G22240 363 / 2e-126 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10030987 [exp] 41 / 0.0006 AT2G35490 354 / 5e-121 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10035384 [exp] 41 / 0.0007 AT2G35490 357 / 5e-122 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G192200 [exp] 366 / 2e-128 AT2G42130 361 / 1e-125 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5) Potri.016G045900 [exp] 362 / 1e-126 AT2G42130 366 / 1e-127 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5) Potri.003G095900 [exp] 47 / 7e-06 AT2G35490 334 / 5e-113 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.004G003200 [exp] 41 / 0.0005 AT4G22240 380 / 1e-132 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04755 [flax] [poplar] PAP_fibrillin PAP_fibrillin
Representative CDS sequence Show only first row Show all	>Lus10016263 pacid=23142661 polypeptide=Lus10016263 locus=Lus10016263.g ID=Lus10016263.BGIv1.0 annot-version=v1.0 ATGGTTCAGCAAGCTGTACAGGGAGCTCCCGTGGCTTATGCCAAGGAGATGGAGCGGCTTTCAGCTAAGGAATCGCTGCTTCTTGCTTTCAAAGATGCTG GAGGATTTGAAGCTCTGGTAACTGGGAAGACAACCGAAGTGCAGCAGATTGATGTGAATGAAATGATTATCGGTCTGGAGCGTCTCAATCCAACGCCTCG GCCAACTACATCGCCTTACTTGGATGGTCAGTGGAATTTCGAGTGGTTCGGAGCTGGAAGCCCTGGATTGTTTGCTGCCAGACTCTTGTTTCAGAGATTT CCTTCAGATTTGGCTAATTTTTCGAATTTGGATGTCGTCATTAAGGAAGGGAAGACAAAGGTGACAGGAAACATGAAGCTATTCAACTCGACAGCACATT CACTCTCTTCACAGCTAATCGTGGAAGGGCCACTTAGAATGAAAGAGGAGTTCACCGAAGGGGTTCTTGAGACGCCGAAACTTATTGAAGAAACAGTACC AGAACAGCTAAAAGGAGCACTTGGTCAAGCTATTAGCACACTGCAACAACTCCCCGTTCCCATTAAGAATGTTATTGCGGACGGCTTGAGAGTTCCACTA GCCGGTACCTTTCAGAGACTCTTCATGATTTCATATCTCGACGAGGAGATACTGGTAAGCCTTTCTTGTCAAATTGTAGCTTTACTCGGGCAACAGATAA TGAGGGATGCTGCTGGAGTACCTGAAATCCTTGCCAGGCTGGAAACACCTGCAGCATTACCGATTCCAGACAATGCCGCGGAATACGAAAGCTAA
AA sequence Show only first row Show all	>Lus10016263 pacid=23142661 polypeptide=Lus10016263 locus=Lus10016263.g ID=Lus10016263.BGIv1.0 annot-version=v1.0 MVQQAVQGAPVAYAKEMERLSAKESLLLAFKDAGGFEALVTGKTTEVQQIDVNEMIIGLERLNPTPRPTTSPYLDGQWNFEWFGAGSPGLFAARLLFQRF PSDLANFSNLDVVIKEGKTKVTGNMKLFNSTAHSLSSQLIVEGPLRMKEEFTEGVLETPKLIEETVPEQLKGALGQAISTLQQLPVPIKNVIADGLRVPL AGTFQRLFMISYLDEEILVSLSCQIVALLGQQIMRDAAGVPEILARLETPAALPIPDNAAEYES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42130			Plastid-lipid associated prote...		Lus10016263 [exp]	0	1
AT3G24200			FAD/NAD(P)-binding oxidoreduct...		Lus10011740 [exp]	3.7	0.9181
AT5G48340			unknown protein		Lus10041085 [exp]	4.5	0.9260
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Lus10004006 [exp]	5.7	0.9166
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10020245 [exp]	5.7	0.9332
AT3G10150		ATPAP16, PAP16	purple acid phosphatase 16 (.1...		Lus10042026 [exp]	7.3	0.9071
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Lus10023647 [exp]	10.2	0.9097
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009047 [exp]	11.6	0.9151
AT1G68940			Armadillo/beta-catenin-like re...		Lus10029112 [exp]	11.8	0.9236
AT1G24880		AtLpxC2	lipid X C2, UDP-3-O-acyl N-ace...		Lus10001592 [exp]	12.5	0.9017
AT1G30140			unknown protein		Lus10024751 [exp]	13.2	0.9224

Compare expression of checked genes

Lus10016263 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.