Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01995 215 / 3e-69 unknown protein AT1G64680 106 / 2e-27 unknown protein AT1G03055 93 / 4e-22 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012004 [exp] 474 / 9e-171 AT4G01995 283 / 9e-96 unknown protein Lus10001667 [exp] 92 / 2e-22 AT1G64680 339 / 1e-119 unknown protein Lus10017338 [exp] 93 / 4e-21 AT1G02800 390 / 1e-130 cellulase 2 (.1) Lus10018752 [exp] 85 / 7e-19 AT1G03055 230 / 5e-75 unknown protein Lus10024837 [exp] 82 / 1e-17 AT1G03055 229 / 1e-73 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G194500 [exp] 256 / 4e-85 AT4G01995 285 / 3e-97 unknown protein Potri.001G083300 [exp] 105 / 6e-27 AT1G64680 383 / 8e-136 unknown protein Potri.005G216400 [exp] 86 / 2e-19 AT1G03055 235 / 8e-77 unknown protein Potri.002G046500 [exp] 82 / 3e-18 AT1G03055 258 / 3e-86 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016264 pacid=23142737 polypeptide=Lus10016264 locus=Lus10016264.g ID=Lus10016264.BGIv1.0 annot-version=v1.0 ATGAAGCCATTGGAGCTCCTTCGTCCTCCTCCTCTTAACTCCGTCTCTTCCGCTTCAGCCCGCCGTTTTTCGCCGGCGACTGATGCCCTCATCCGTAGAT CCAGACTCCGACGACCTTGCTCTTCAACTGAATCGGAGCCAGTTCGGTATCCTTCTTCCCAAAATTTCAATTACAGAGAATTGGGTTTCTCTAGTCACCA CTCCCGATTACCTGATTTTCATGACTTCTTTCAGGCGAAACTGGAGGTTCTCCGGTCGGATTACAAACCTGGGGTCCTCGATGACGTGTTTATAGGCTTG TTCCGAAGCAGAATGGTGAAGGAGGTAGGCTGGGACTCTGAGAAGCCTGGATACGATGGACTGATCGAAGTGGCGAATCGGCTGATGCTGATTGGCAGAA GCAGTTCCTACACTAGAGATGCAGCTCTGATATCGCCTCTAGCAGGAGGGCAAGTTGCTGCAGTTATGGTTGGTGAGTTTTGTTTAGGGAATTTGAAAAT TCGAATCAAGGGTGACACGAAATGCAGTGTGAATACAGTTGATCTTCCTGATGGAACTTCATGGGAGAGTGGGGTTTTTGTAGAGAAATGCAAGTATCTG GAAGAAAGCAAATGTGTTGGCATTTGTATCAACACTTGTAAGCTTCCAACACAGACGTTCTTCAACGACTATATGGGAGTTCCTCTGCTGATGGAGCCAA ATTTCACTGACTACAGTTGTCAGTTCAAGTTTGGAGTGGCGGCACCGCTACCAGAAGATGATGTTGCCGTTATAGAGCCATGTTTGGCGATCTGCCCAAC TGCTAGTAGAAGAAGGATTGTTCCTGATAGCACATTTCAATGTCCCAAGGCGTAG
AA sequence Show only first row Show all	>Lus10016264 pacid=23142737 polypeptide=Lus10016264 locus=Lus10016264.g ID=Lus10016264.BGIv1.0 annot-version=v1.0 MKPLELLRPPPLNSVSSASARRFSPATDALIRRSRLRRPCSSTESEPVRYPSSQNFNYRELGFSSHHSRLPDFHDFFQAKLEVLRSDYKPGVLDDVFIGL FRSRMVKEVGWDSEKPGYDGLIEVANRLMLIGRSSSYTRDAALISPLAGGQVAAVMVGEFCLGNLKIRIKGDTKCSVNTVDLPDGTSWESGVFVEKCKYL EESKCVGICINTCKLPTQTFFNDYMGVPLLMEPNFTDYSCQFKFGVAAPLPEDDVAVIEPCLAICPTASRRRIVPDSTFQCPKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01995			unknown protein		Lus10016264 [exp]	0	1
AT1G01020		ARV1	Arv1-like protein (.1.2)		Lus10007219 [exp]	1.0	0.8457
AT5G36930			Disease resistance protein (TI...		Lus10000738 [exp]	2.8	0.8228
AT3G59570			Ypt/Rab-GAP domain of gyp1p su...		Lus10022963 [exp]	3.9	0.7902
AT1G54730			Major facilitator superfamily ...		Lus10029971 [exp]	4.5	0.8227
AT1G31170		ATSRX	sulfiredoxin (.1.2.3.4)		Lus10038354 [exp]	8.5	0.8325
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10022735 [exp]	9.8	0.7971
AT5G52880			F-box family protein (.1)		Lus10027547 [exp]	11.2	0.7890
AT2G26600			Glycosyl hydrolase superfamily...		Lus10038099 [exp]	12.3	0.7871
AT2G36410			Family of unknown function (DU...		Lus10023876 [exp]	15.0	0.8107
AT1G54680			unknown protein		Lus10018965 [exp]	15.4	0.8237

Compare expression of checked genes

Lus10016264 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.