Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G66654 221 / 1e-72 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) AT2G47320 177 / 9e-56 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G44600 89 / 4e-20 AtCYP71, CYP71 cyclophilin 71, cyclophilin71 (.1) AT2G36130 82 / 2e-19 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT1G01940 75 / 9e-17 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G67530 74 / 6e-15 ATPUB49 plant U-box 49 (.1) AT2G15790 66 / 2e-12 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) AT5G13120 62 / 3e-11 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) AT2G29960 61 / 4e-11 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT4G33060 62 / 5e-11 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012005 [exp] 380 / 1e-134 AT3G66654 259 / 5e-87 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10021052 [exp] 319 / 2e-111 AT3G66654 282 / 1e-96 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10004174 [exp] 316 / 4e-110 AT3G66654 272 / 8e-93 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10006271 [exp] 92 / 2e-21 AT3G44600 1110 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10020573 [exp] 92 / 2e-21 AT3G44600 1115 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10004731 [exp] 76 / 1e-15 AT5G67530 916 / 0.0 plant U-box 49 (.1) Lus10007794 [exp] 74 / 6e-15 AT5G67530 868 / 0.0 plant U-box 49 (.1) Lus10011330 [exp] 71 / 1e-14 AT5G13120 336 / 2e-117 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Lus10003138 [exp] 71 / 2e-14 AT5G13120 333 / 2e-115 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G105800 [exp] 233 / 1e-77 AT3G66654 306 / 2e-106 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Potri.010G144500 [exp] 222 / 3e-73 AT3G66654 311 / 2e-108 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Potri.002G194250 [exp] 100 / 9e-26 AT2G47320 125 / 1e-35 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G146400 [exp] 89 / 3e-20 AT3G44600 1095 / 0.0 cyclophilin 71, cyclophilin71 (.1) Potri.016G075600 [exp] 81 / 8e-19 AT2G36130 278 / 3e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G149700 [exp] 74 / 3e-16 AT1G01940 293 / 3e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.005G148900 [exp] 75 / 3e-15 AT5G67530 806 / 0.0 plant U-box 49 (.1) Potri.001G060200 [exp] 66 / 1e-12 AT5G13120 297 / 7e-102 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Potri.003G167700 [exp] 64 / 3e-12 AT5G13120 277 / 5e-94 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Potri.005G135500 [exp] 64 / 7e-12 AT2G15790 553 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10016265 pacid=23142679 polypeptide=Lus10016265 locus=Lus10016265.g ID=Lus10016265.BGIv1.0 annot-version=v1.0 ATGGCGAGGATCAAACCTCAAGCTCTGTTGCAACAGAGCAAGAAGAAGAAAGCGCCGAGCCGTATAAGCGCCACAACTGTCATAATCTGCAGTTTGATCG CTGTTTTGGCTTTGTTCTTCCTCTACTCTACTTACAAGCACCGTTCCATCAGGTCTAGCATCGAGAATTCCAGCTCCGAGGATGGTCGTAAGCTTCAGGA ATTGGTCGAATCTGATATCCCTGGATATGCGATCTTTACTACATCAAAAGGGCCTCTGACTGTGGAGCTTTTAAAGGATAGCTCTCCTCAAATCATCGAG AAGTTCATTGACTTATGTAAGAAAGGGCATTTCATGGGGATGCAATTTCTTCGCGTGGTAAAGCACTATGTGATTCAAGCAGGGAACACTGATAATCTGG GCAATACAGAGGATTGGACTGTGAAAGGAAACGATAATGCACAACTTCATTCAAGCGTGAAACACGAATCGTTAATGGTTGGAACTTCGAAGGGTAAACA TGACGACAAAGGATTCGACCTTTTCATCACAACTGCACCAATGCCAGACCTTAACGAGAAGCTGGTGGTTTTTGGACGAGTTGTCAAGGGAGAAGATGTA GTTCAGGAAATCGAAGAGGTGGATACCGACGAACACTACCAGCCTAAGAGTCGAATAGAAATCACTAGTGTCGCTCTGCAACAGAAGGCTTAG
AA sequence Show only first row Show all	>Lus10016265 pacid=23142679 polypeptide=Lus10016265 locus=Lus10016265.g ID=Lus10016265.BGIv1.0 annot-version=v1.0 MARIKPQALLQQSKKKKAPSRISATTVIICSLIAVLALFFLYSTYKHRSIRSSIENSSSEDGRKLQELVESDIPGYAIFTTSKGPLTVELLKDSSPQIIE KFIDLCKKGHFMGMQFLRVVKHYVIQAGNTDNLGNTEDWTVKGNDNAQLHSSVKHESLMVGTSKGKHDDKGFDLFITTAPMPDLNEKLVVFGRVVKGEDV VQEIEEVDTDEHYQPKSRIEITSVALQQKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G66654			Cyclophilin-like peptidyl-prol...		Lus10016265 [exp]	0	1
AT3G25220		FKBP15-1	FK506-binding protein 15 kD-1 ...		Lus10002339 [exp]	1.4	0.8671
AT3G66654			Cyclophilin-like peptidyl-prol...		Lus10012005 [exp]	1.7	0.8260
AT4G02580			NADH-ubiquinone oxidoreductase...		Lus10014727 [exp]	3.5	0.8112
AT4G08520			SNARE-like superfamily protein...		Lus10006883 [exp]	3.7	0.8402
AT1G75420			UDP-Glycosyltransferase superf...		Lus10024281 [exp]	4.2	0.8069
AT4G08520			SNARE-like superfamily protein...		Lus10037624 [exp]	5.0	0.8181
AT2G05840		PAA2	20S proteasome subunit PAA2 (....		Lus10027669 [exp]	5.9	0.8080
AT5G24170			Got1/Sft2-like vescicle transp...		Lus10019023 [exp]	7.4	0.7916
AT2G38650		GAUT7, LGT7	LIKE GLYCOSYL TRANSFERASE 7, g...		Lus10035615 [exp]	9.7	0.7538
AT1G06890			nodulin MtN21 /EamA-like trans...		Lus10024194 [exp]	10.2	0.7454

Compare expression of checked genes

Lus10016265 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.