Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09670 248 / 8e-72 Tudor/PWWP/MBT superfamily protein (.1.2) AT5G02950 201 / 3e-55 Tudor/PWWP/MBT superfamily protein (.1) AT5G40340 96 / 4e-20 Tudor/PWWP/MBT superfamily protein (.1) AT5G27650 94 / 1e-19 Tudor/PWWP/MBT superfamily protein (.1) AT3G27860 92 / 6e-19 Tudor/PWWP/MBT superfamily protein (.1) AT3G05430 86 / 4e-17 Tudor/PWWP/MBT superfamily protein (.1) AT3G48190 67 / 4e-11 PIG1, ATATM, ATM pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012010 [exp] 787 / 0 AT3G09670 283 / 2e-85 Tudor/PWWP/MBT superfamily protein (.1.2) Lus10040367 [exp] 178 / 5e-46 AT5G02950 209 / 8e-56 Tudor/PWWP/MBT superfamily protein (.1) Lus10023486 [exp] 177 / 1e-45 AT5G02950 207 / 2e-55 Tudor/PWWP/MBT superfamily protein (.1) Lus10032141 [exp] 132 / 2e-31 AT5G40340 187 / 3e-48 Tudor/PWWP/MBT superfamily protein (.1) Lus10014546 [exp] 130 / 9e-31 AT5G40340 184 / 2e-47 Tudor/PWWP/MBT superfamily protein (.1) Lus10031498 [exp] 91 / 3e-18 AT5G27650 633 / 0.0 Tudor/PWWP/MBT superfamily protein (.1) Lus10015177 [exp] 89 / 1e-17 AT5G27650 634 / 0.0 Tudor/PWWP/MBT superfamily protein (.1) Lus10002382 [exp] 71 / 4e-12 AT3G48190 115 / 1e-25 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Lus10042113 [exp] 64 / 5e-10 AT3G48190 115 / 1e-25 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G085500 [exp] 293 / 5e-89 AT3G09670 260 / 4e-77 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.006G131800 [exp] 291 / 9e-86 AT3G09670 236 / 2e-66 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.010G216900 [exp] 224 / 4e-61 AT3G09670 235 / 7e-65 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.008G044600 [exp] 221 / 4e-60 AT5G02950 279 / 2e-80 Tudor/PWWP/MBT superfamily protein (.1) Potri.004G130600 [exp] 129 / 1e-30 AT5G40340 220 / 5e-59 Tudor/PWWP/MBT superfamily protein (.1) Potri.005G026800 [exp] 100 / 3e-21 AT5G27650 431 / 1e-132 Tudor/PWWP/MBT superfamily protein (.1) Potri.013G018700 [exp] 91 / 2e-18 AT5G27650 687 / 0.0 Tudor/PWWP/MBT superfamily protein (.1) Potri.012G081500 [exp] 82 / 7e-16 AT3G48190 131 / 2e-30 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Potri.008G209900 [exp] 45 / 6e-05 AT5G27650 149 / 1e-41 Tudor/PWWP/MBT superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [flax] [poplar] Tudor PF00855 [flax] [poplar] PWWP PWWP domain
Representative CDS sequence Show only first row Show all	>Lus10016267 pacid=23142735 polypeptide=Lus10016267 locus=Lus10016267.g ID=Lus10016267.BGIv1.0 annot-version=v1.0 ATGTCCGGCGACGCTGTTGAGTTGAACGCCGACGGCGACTCTTCCGGTAAGCCGGTAAAAGCTGGTTTCAGTGTTCCTAAATCCGTAGCGGCCACGGTTG AGGTTGTTGCTTGCTCGGGTGCTGAAACCCTAGTTGACTCTGGAGTCAACTGTCTGAAAGAGAAGGCAGTAGGAGACGAGCAAGTTCGTACGGTTGAACG AATCGACGAGTTGAAGGATGCAGGTGGATTTGCTTGCGGGAAAGGAGATGAAGAAGAAGAAGAACGTTTTGAGAAGGTGGAATTGAACGCTTCTAGTGAA CCTAGTAGCTCCAACGGCGGCCGTTCGAGATCCAAATTGGGTGATTCTGATTCTGAATCCCTAGTTCACTCTGTGGTCAACGGTCTGAAAGAGAGGCCAG AAGGAGACGAAGAAGTTAGTGTGGTTGAAGGGATTGACGAGTTGAAGGATGCAGGTTTAGATTGTTCCAAATTTGAATCTTGTAATGGTGAAGTTAATAC AGATTCTGAGATTGGTGCTTTCCGGGGAAGAACTGAAACAATAGAGCTTCTTGAGCAAGGAGATGATGAAGAAGAAGAGCGTTCTGAGAAAGCCGAATTG AACGCTTCTTCCGAACCTAGCAGCTCGAAAGGTGGCCGTTTGAGATCCAAATTCGGCGATTCCGATTTGGTATGGGCGAAAGTAAGGAGTCATCCATGGT GGCCAGGGCAGGTGTTTGATGCTTCCATGGCGTCAGATAAGGCTAAGAAGTATATGAAGAAGGAAAGACATCTGATAGCTTACTTCGGGGACCAATCGTT TGCTTGGAATGAGACATCAAAGATAAAGCCCTTTCTCACTAATTTTCCGCAGATGTCGAATCAGAAGAATAGCAATCTGGACGACTTTCACGATGCTGTT GATGATGCTCTTGATGAAGTTTCCAGACGTGTTGAGTTCGGCCTCTCGTGCCCCTGTGTGGCCGAGCACAGCCGGATTAGAACTCAGGTAATTGTCAACC CCGGGGTTAAGGATGAATGTTGCAGAAGAGATGGTAGTGATAGATTTTCCACAACTGATTCGTTTGAACCGGAGAAACTTGTTGAGTGCATCAAAAGACT AGGTCGAATAGGACGGTCGCCATTATTGAGTGATGTTGATAGGCTAGAATTCGTAACTGTACGAGCACAGTTATTGGCGTTTAGTCGTTGGAAGGGTTTC CCCGAGTTGCCTGAACTCCAAGTTCTCGGGACAGTGTTGAACGAAGCTGAAGCTGAAGCAGATGTTCCATTATCTGATCGGAAGGAGCATGTCGGTATTA TCAAGAGAGATGATAAGCATGGGTTGTCTATAAAGACATATTCTAGTAAGAGGAAGCGCGATTCGGTGGTGGAGGGGGGACAACTTCCTGCAAAGAAAGA GAGAACCTTGGCTGATTATATTGCCGAGATGCGATCCTCGAAATCGAATGGTAAAGGAAAATTGGACATTGGGAAGTCTGCTGGAAAGAAGAAGAAGCGA CAGGCTGCTGATTCGGATTCAGGTTTTGGTGTTGCTGCGAAGAAGAAAAGACAGGATCTTTCGACTCCTGAAGGTAGTAAGAACATTGTGGTCGAGACGC CCCGCCCTAAGGGAAGTTTCGGAATTGGCTATAGCATACTCAAGGTTGCAAGTCAAATGAACAGTCCATCCCCAATACTCAAGTCCCAGAATGTGTCTTC TCGAAAGAGTGAAGAGAATAAAGGAAGTAAGACTAAGGAGAAGAAGAAGAAGAAGAAGAAAGGAAGTAAGACGAAGGGGAAGAAGAACGGAAGTGAAAAT AAGTCGGCAAAACCCAGGAGCAGCAAAAAAGCACCGGAAGAGCTCGAGAAAGGAAGCGACAACCCGGAGTCTCAGGTTAACTCACCTGAAGAAGTGCCGA ATACAGTTTGCGAGGAACACAGGGAAGAAGCATCCAAGGTGGAAACAGAAATGGAAGATGAGCAAGTAGAAGGCACCGAGGAAGAAAATTTGTCAGAGGG AAATGGAAACTCAAAGGTAGAAACAGAAATGCAAGATGAACAAGAAGGCACTGATGAGGAAAATTTGTCAGAGGGAGATGAAAAAAATGGGGAGGCTAAG ACTACTCCGACTGATGAGCTGATTCAAGACATTGAACTAGTGCAACCGGGTGATGAACAGAGCGATGATGCTTCAGTTCCTGAACAGCAAAACGCTGACG AATATGTTGATGGTGTGGATGCAGTGAAGGAGCAGCAAGAGTTGCAGAGTTCTCTGTTGGGATCAGCATGA
AA sequence Show only first row Show all	>Lus10016267 pacid=23142735 polypeptide=Lus10016267 locus=Lus10016267.g ID=Lus10016267.BGIv1.0 annot-version=v1.0 MSGDAVELNADGDSSGKPVKAGFSVPKSVAATVEVVACSGAETLVDSGVNCLKEKAVGDEQVRTVERIDELKDAGGFACGKGDEEEEERFEKVELNASSE PSSSNGGRSRSKLGDSDSESLVHSVVNGLKERPEGDEEVSVVEGIDELKDAGLDCSKFESCNGEVNTDSEIGAFRGRTETIELLEQGDDEEEERSEKAEL NASSEPSSSKGGRLRSKFGDSDLVWAKVRSHPWWPGQVFDASMASDKAKKYMKKERHLIAYFGDQSFAWNETSKIKPFLTNFPQMSNQKNSNLDDFHDAV DDALDEVSRRVEFGLSCPCVAEHSRIRTQVIVNPGVKDECCRRDGSDRFSTTDSFEPEKLVECIKRLGRIGRSPLLSDVDRLEFVTVRAQLLAFSRWKGF PELPELQVLGTVLNEAEAEADVPLSDRKEHVGIIKRDDKHGLSIKTYSSKRKRDSVVEGGQLPAKKERTLADYIAEMRSSKSNGKGKLDIGKSAGKKKKR QAADSDSGFGVAAKKKRQDLSTPEGSKNIVVETPRPKGSFGIGYSILKVASQMNSPSPILKSQNVSSRKSEENKGSKTKEKKKKKKKGSKTKGKKNGSEN KSAKPRSSKKAPEELEKGSDNPESQVNSPEEVPNTVCEEHREEASKVETEMEDEQVEGTEEENLSEGNGNSKVETEMQDEQEGTDEENLSEGDEKNGEAK TTPTDELIQDIELVQPGDEQSDDASVPEQQNADEYVDGVDAVKEQQELQSSLLGSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09670			Tudor/PWWP/MBT superfamily pro...		Lus10016267 [exp]	0	1
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10017858 [exp]	1.0	0.8839
AT3G16840			P-loop containing nucleoside t...		Lus10004404 [exp]	8.9	0.7955
AT5G64930		HYS1, CPR5	HYPERSENESCENCE 1, CONSTITUTIV...		Lus10035856 [exp]	12.6	0.7572
AT1G13030			sphere organelles protein-rela...		Lus10036876 [exp]	14.5	0.8519
AT2G35540			DNAJ heat shock N-terminal dom...		Lus10039019 [exp]	17.8	0.7685
AT2G44020			Mitochondrial transcription te...		Lus10004614 [exp]	18.2	0.8127
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10014049 [exp]	22.2	0.8309
AT1G77360			Tetratricopeptide repeat (TPR)...		Lus10009123 [exp]	25.7	0.8129
AT3G16980		NRPE9A, NRPD9A,...	RNA polymerases M/15 Kd subuni...		Lus10037747 [exp]	25.9	0.8045
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10008269 [exp]	31.1	0.8215

Compare expression of checked genes

Lus10016267 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.