Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57990 119 / 3e-33 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012012 [exp] 210 / 8e-72 ND 164 / 2e-50 Lus10016270 [exp] 214 / 4e-70 AT3G57990 300 / 4e-100 unknown protein Lus10012013 [exp] 201 / 6e-65 AT3G57990 296 / 3e-98 unknown protein Lus10004184 [exp] 143 / 1e-42 AT3G57990 329 / 3e-111 unknown protein Lus10021042 [exp] 143 / 2e-42 AT3G57990 341 / 6e-116 unknown protein Lus10000401 [exp] 121 / 9e-37 AT3G57990 107 / 4e-29 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G046900 [exp] 112 / 3e-31 AT3G57990 345 / 3e-118 unknown protein Potri.006G191800 [exp] 112 / 1e-30 AT3G57990 299 / 1e-99 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016269 pacid=23142684 polypeptide=Lus10016269 locus=Lus10016269.g ID=Lus10016269.BGIv1.0 annot-version=v1.0 ATGAACCTAGGGTTTCCGTTTCCATTCCCGATCAAATTGAACTCAGCGCTCATCACGAAGGGGCTGGAGATCGGCGACCCGAAATCCCCCGTCCCTGTCT TGACCACTAGCGAGAACGGATTCCATGAATCGTTGGGGCGGTACGCGACCTTGAGCGACGGGCCCGAATCGAAGAACGTTGAGAAGTTGAGGGAGAGCTC CTTGAAGTCTCCGGCGACGATCCCGGACTGGAATGGGAAGCCGAGGATGTTGAGAGGGATCTTCCCCCTGAACAGCGGCGGCTTCTGCTCGTCTCGGAAT TTGAGTGAGGCTTTCATCTCTGCTTCTGCTCTTAATGAAGAAGAAGAAGAATCATTCCGGTGA
AA sequence Show only first row Show all	>Lus10016269 pacid=23142684 polypeptide=Lus10016269 locus=Lus10016269.g ID=Lus10016269.BGIv1.0 annot-version=v1.0 MNLGFPFPFPIKLNSALITKGLEIGDPKSPVPVLTTSENGFHESLGRYATLSDGPESKNVEKLRESSLKSPATIPDWNGKPRMLRGIFPLNSGGFCSSRN LSEAFISASALNEEEEESFR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10016269 [exp]	0	1
					Lus10022880 [exp]	1.0	0.8828
					Lus10012012 [exp]	2.8	0.8620
AT5G47570			unknown protein		Lus10008504 [exp]	3.3	0.8143
AT5G63135			unknown protein		Lus10019491 [exp]	4.2	0.8340
					Lus10009774 [exp]	5.3	0.8245
AT5G39210		CRR7	chlororespiratory reduction 7 ...		Lus10032982 [exp]	6.3	0.8461
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Lus10042404 [exp]	7.1	0.8175
AT5G41010		NRPE12, NRPD12,...	DNA directed RNA polymerase, 7...		Lus10007891 [exp]	7.5	0.8219
AT3G02120			hydroxyproline-rich glycoprote...		Lus10015381 [exp]	8.5	0.8177
AT2G28105			unknown protein		Lus10021424 [exp]	10.9	0.8005

Compare expression of checked genes

Lus10016269 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.