Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57990 283 / 2e-93 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012013 [exp] 630 / 0 AT3G57990 296 / 3e-98 unknown protein Lus10021042 [exp] 345 / 2e-117 AT3G57990 341 / 6e-116 unknown protein Lus10004184 [exp] 325 / 1e-109 AT3G57990 329 / 3e-111 unknown protein Lus10016269 [exp] 216 / 3e-70 ND 169 / 1e-52 Lus10012012 [exp] 201 / 2e-64 ND 164 / 2e-50 Lus10000401 [exp] 119 / 8e-33 AT3G57990 107 / 4e-29 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G191800 [exp] 298 / 6e-99 AT3G57990 299 / 1e-99 unknown protein Potri.016G046900 [exp] 290 / 2e-96 AT3G57990 345 / 3e-118 unknown protein Potri.003G088500 [exp] 107 / 8e-26 AT3G57990 58 / 5e-09 unknown protein Potri.001G145400 [exp] 96 / 6e-22 AT3G57990 80 / 3e-16 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016270 pacid=23142657 polypeptide=Lus10016270 locus=Lus10016270.g ID=Lus10016270.BGIv1.0 annot-version=v1.0 ATGAAAGCCTCACTCAAATTCCGAGACGAGCAGAAGCCGCCGCTGTTCAGGGGGAAGATCCCTCTCAACATCCTCGGCTTCCCATTCCAGTCCGGGATCG TCGCCGGAGACTTCAAGGAGCTCTCCCTCAACTTCTCAACGTTCTTCGATTCGGGCCCGTCGCTCAAGGTCGCGTACCGCCCCAACGATTCATGGAATCC GTTCTCGCTAGTGGTCAAGACAGGGACGGGGGATTTCGGGTCGCCGATCTCCAGCCCCTTCGTGATGAGCGCTGAGTTCAATTTGATCGGGAATGGAAAC GGAAACCCTAGGTTCATGCTCCATTTCAAGCCTCGGTTGGGGGATTTCTCGATTAAGAAGTCGCAGACTTCAGTCGCGAAGAACGAAAGCGTTAGGTCTT GGCGAAACGGCGTTGTGGTCAACGCTCCACCGGATCTGGACGATGGATCGCTCCACGCGGTGGAGCTTGAGAAGCCGGCGGAGAATGGGACTGGAGCCAA GAGGTTTACTACTGTTCTGTCGACGACGACGACAACGAACGCGATCGCGGCGGGTTTATCGGGCGTGGAAGTGACAGCGGAGACGAAGCTTCCGATCAGG AGTCACGCCGTGATGAGTTTTCGATGGGGGCTTAGGGTTCCGGTGACGACGAACAAACTCGGGAACGGTTACGATGACCTCGATTGGATGATCAACTTCA AGAACATTCCTTTACTTGTGATGAACAAAATCGGGATAGAACTCGTCGACAAATCCGATTCGAAATTGAAATCGAAACCGGTGGAGACTACCATCAAACA GAAGCCTGACGATGTGGAGGCGATGAACCGGCAGCTGGAAATGCTGCAAAGGGATAATGAGTTGCTCAAGAAAGGAATGGATGATCTTAGGCATGAGATT GGCGGGAGGAGCAGATTCCTTATGCTGAATCCGGATTCTGGATTCAACAGGTACAGAGAAGAAGCTGATAGGAACCGGAGTAGGAATCCTGGTGGGAATA GGATTGAAAAGACAAAGAAGAAGGGTTCATCAGTGGAAGAAGATGTCAGTGAGGAGCTGAAGAAAGCTTTGAAAGGAGCTGCAAATGCTAGTTCTTGA
AA sequence Show only first row Show all	>Lus10016270 pacid=23142657 polypeptide=Lus10016270 locus=Lus10016270.g ID=Lus10016270.BGIv1.0 annot-version=v1.0 MKASLKFRDEQKPPLFRGKIPLNILGFPFQSGIVAGDFKELSLNFSTFFDSGPSLKVAYRPNDSWNPFSLVVKTGTGDFGSPISSPFVMSAEFNLIGNGN GNPRFMLHFKPRLGDFSIKKSQTSVAKNESVRSWRNGVVVNAPPDLDDGSLHAVELEKPAENGTGAKRFTTVLSTTTTTNAIAAGLSGVEVTAETKLPIR SHAVMSFRWGLRVPVTTNKLGNGYDDLDWMINFKNIPLLVMNKIGIELVDKSDSKLKSKPVETTIKQKPDDVEAMNRQLEMLQRDNELLKKGMDDLRHEI GGRSRFLMLNPDSGFNRYREEADRNRSRNPGGNRIEKTKKKGSSVEEDVSEELKKALKGAANASS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57990			unknown protein		Lus10016270 [exp]	0	1
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10008652 [exp]	6.6	0.7334
AT2G29410		ATMTPB1, MTPB1	metal tolerance protein B1 (.1...		Lus10040744 [exp]	8.0	0.6774
AT2G37660			NAD(P)-binding Rossmann-fold s...		Lus10024383 [exp]	8.4	0.6932
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Lus10038866 [exp]	13.0	0.7259
AT5G64920		CIP8	COP1-interacting protein 8 (.1...		Lus10031422 [exp]	15.9	0.7248
AT2G29960		CYP19-4, ATCYP5...	CYCLOPHILIN 19-4, ARABIDOPSIS ...		Lus10014846 [exp]	16.0	0.7055
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Lus10001751 [exp]	27.8	0.6746
AT3G61050		AtCLB, NTMCTYPE...	calcium-dependent lipid-bindin...		Lus10036532 [exp]	28.5	0.6641
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Lus10030755 [exp]	29.6	0.6507
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Lus10001177 [exp]	30.8	0.6847

Compare expression of checked genes

Lus10016270 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.